Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31582
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 27 2.7
10_06_0140 + 11147019-11147791,11148301-11150524 27 3.6
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 27 3.6
03_05_0675 + 26630466-26632070 26 4.7
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 26 4.7
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 26 6.3
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 26 6.3
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 26 6.3
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 26 6.3
10_03_0040 - 7307108-7307564,7307611-7307915 25 8.3
08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337 25 8.3
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 25 8.3
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 140 GRTLRGALVQNWQKGK 187
GRT+ G + +NWQ+GK
Sbjct: 317 GRTIAGLIWENWQQGK 332
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 151 TRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHI 288
+RC L K+ + L +H + L+ + V + +YSSLP H+
Sbjct: 360 SRCQQQPLGCAKLCDNLGKHLVTEDTLARMK-RVLVHHYSSLPGHV 404
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 60 LVKNIDNVANNCVTESNLKRWS*ESYTVEHYEVH*YRTGKKESYE*IVRTCTEPDSSIYT 239
L + ANN + E + S +E H TG ++ ++RT E DSS+Y
Sbjct: 412 LTSTNNETANN-IMEGKVSASSSPEELLEQALQH-LETGNQDQAIPLIRTAIEKDSSLYV 469
Query: 240 TMDCSDEVLFESTI 281
+ + LF + +
Sbjct: 470 ALIGMGQTLFSNRL 483
>03_05_0675 + 26630466-26632070
Length = 534
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 130 KAIRSNITRCISTELAKRKVTNKLLEH 210
KA + ++ C+ E AKR KLL H
Sbjct: 295 KAFKDMVSSCLCQEPAKRPSAEKLLRH 321
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 83 NIINIFY*NYSVQMSGTVFWK 21
N++ IF+ ++ M GT+FW+
Sbjct: 1253 NLVRIFFALFTALMLGTIFWR 1273
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 168 RTGKKESYE*IVRTCTEPDSSIYTTMDCSDEVLFESTITYK 290
+TG +ES+ ++RT +S I TT S E+ + +TY+
Sbjct: 144 QTGGQESFTSLLRTPAFDNSMILTTSRFSPELEEQQDMTYE 184
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +1
Query: 112 LSDGLKKAIRSNITRCISTELAKR---KVTNKLLEHAQNQTVLSTPQWTVQMRYY 267
LS AI S I RC STE A+R K +LE P W +Y
Sbjct: 266 LSPSCPPAINSLIKRCWSTEPARRPEFKQIVSVLESYDRCLRQGLPMWICDSMFY 320
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 160 ISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIK 291
++ EL +RK KL E + + Q ++ SSLP+H+K
Sbjct: 172 LNFELVQRKELCKLHEKLEQRKSSLLDTIANQKKFLSSLPTHLK 215
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 168 RTGKKESYE*IVRTCTEPDSSIYTTMDCSDEVLFESTITYK 290
+TG +ES+ ++RT +S I TT S E+ + +TY+
Sbjct: 188 QTGGQESFTSLLRTPAFDNSMILTTSRFSPELEEQQDMTYE 228
>10_03_0040 - 7307108-7307564,7307611-7307915
Length = 253
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 169 ELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNL 300
E+A + +++ + + T L PQW + + YSS PS++++ L
Sbjct: 173 EVASGRRRSQVFDVCSSATRL--PQWRRRQQDYSSTPSNLQLRL 214
>08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337
Length = 263
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 273 TRIIPHLNSPLWCR*NCLVLCMF*QFIRNFPF 178
T I +N C+ ++LCM QFI N PF
Sbjct: 155 TTITQSINLTPNCKFALVLLCMHHQFITNSPF 186
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 130 KAIRSNITRCISTELAKRKVTNKLLEH---AQNQTV 228
KA R N++ C++ E + + N L+EH A NQ V
Sbjct: 99 KATRWNVSCCVTRECEFKFIWNWLMEHFNPATNQLV 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,608
Number of Sequences: 37544
Number of extensions: 131817
Number of successful extensions: 302
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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