Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31578
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...   176   2e-45
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    75   1e-14
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    69   7e-13
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    56   3e-09
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    55   9e-09
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    29   0.70 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.6  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   8.6  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score =  176 bits (429), Expect = 2e-45
 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
 Frame = +3

Query: 9   MATDNLTALLYKPNDLRLVQTPIPEISDD-EVLLRMDCVGICGSDVHYWQKGQCGHFVLE 185
           MA      +L K  D  +   P   ++DD +V + +   GICGSDVHYW++G  G F+L+
Sbjct: 1   MAPAEKAFVLRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILK 60

Query: 186 EPMIMGHEASGVVAKIGSKVKNLTVGDRVAIEPGVPCRYCEFCKTGRYHLCPDMIFCATP 365
           +PMI+GHE++GVV ++G  V +L  GD VA+EPG  CR C++C++GRY+LCP M F ATP
Sbjct: 61  KPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATP 120

Query: 366 PVHGNLVRYYKHAADFCFKLPDHVTMEEGALLEPLAVGIHA 488
           P  G L  YY    DFC KLP  +++EEGAL EP++V +HA
Sbjct: 121 PYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHA 161



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 27/108 (25%), Positives = 37/108 (34%)
 Frame = +1

Query: 283 PACRVGTASSVRQDDTTYAPT*SSAPRPQYTETSSDITSTQPIFASSFLIT*PWKKERYW 462
           P C        R       P    A  P Y  T      T   F +        ++   +
Sbjct: 93  PGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALF 152

Query: 463 SPSRWAFTRARGAEFSAGHVVLVLGAGPIGLLTMLTAKAFGAHKVLII 606
            P   A           G  VLV+G G +GLL M  AKA+GA  ++ +
Sbjct: 153 EPMSVAVHAMTRGNLKCGSRVLVMGCGTVGLLMMAVAKAYGAIDIVAV 200


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
 Frame = +3

Query: 45  PNDLRLVQTPIPEISDDEVLLRMDCVGICGSDVHYWQKGQCGHFVL--EEPMIMGHEASG 218
           P +++  + P+ E   DEVL+ +   G+C +D+H  Q    G + L  + P+I GHE +G
Sbjct: 18  PENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQ----GDWPLPAKMPLIGGHEGAG 73

Query: 219 VVAKIGSKVKNLTVGDRVAIE-PGVPCRYCEFCKTGRYHLCPDMIFCATPPVHGNLVRYY 395
           VV K+G+ V  L +GDRV ++     C  CE+C      +CP  I  +   V G    Y 
Sbjct: 74  VVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPH-IQLSGYTVDGTFQHYC 132

Query: 396 KHAADFCFKLPDHVTMEEGA 455
              A     +P+ V +E  A
Sbjct: 133 IANATHATIIPESVPLEVAA 152


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +3

Query: 45  PNDLRLVQTPIPEISDD-EVLLRMDCVGIC-GSDVHYWQKGQCGHFVLEEPMIMGHEASG 218
           P ++++ + P P I+   +V+++     IC GSD H +     G   +E+  I+GHE+ G
Sbjct: 45  PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPG---IEKGAILGHESCG 101

Query: 219 VVAKIGSKVKNLTVGDRVAIEPGVPCRYCEFCKTGRYHLC 338
           +VA+ G +V NL +GDRV I   + C  C FCK   Y  C
Sbjct: 102 IVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAAC 141



 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 502 EFSAGHVVLVLGAGPIGLLTMLTAKAFGAHKVL 600
           E   G  V + G GPIGL     A+  GA KV+
Sbjct: 218 EVKKGDTVAIWGMGPIGLYAGRWAQILGASKVI 250


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 32/98 (32%), Positives = 53/98 (54%)
 Frame = +3

Query: 45  PNDLRLVQTPIPEISDDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVV 224
           P  +  VQ   P +   EV +++   G+C +D  Y   G+    +   P+I+GHE +G+V
Sbjct: 24  PLSIENVQVFPPRVH--EVRIKIVNSGVCHTDA-YTLSGKDPEGLF--PVILGHEGAGIV 78

Query: 225 AKIGSKVKNLTVGDRVAIEPGVPCRYCEFCKTGRYHLC 338
             +G +V  + VGD V       C+ C+FCK+G+ +LC
Sbjct: 79  ESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLC 116


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 27/81 (33%), Positives = 45/81 (55%)
 Frame = +3

Query: 96  EVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVVAKIGSKVKNLTVGDRVA 275
           EV +++D   +C +D  Y   G         P+++GHE +G+V  IG  V N+  GD V 
Sbjct: 36  EVRVKVDWSAVCHTDA-YTLSGVDPEGAF--PIVLGHEGAGIVESIGEGVINVRPGDHVI 92

Query: 276 IEPGVPCRYCEFCKTGRYHLC 338
           +     C+ C+FC++G+ +LC
Sbjct: 93  LLYTPECKECKFCRSGKTNLC 113



 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 499 AEFSAGHVVLVLGAGPIGLLTMLTAKAFGAHKVLII 606
           A+  +G  V V+G G +GL  M  A A GA +++ I
Sbjct: 189 AKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAI 224


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 180 LEEPMIMGHEASGVVAKIGSKVKNLTVGDRV 272
           L+ P++ G + +G++ K+G  V+    GD V
Sbjct: 58  LQLPVVPGSDGAGIIEKVGEDVEGFEKGDSV 88


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 440 GHVIRKLEAKIGCVLVISDEVSVYWGRGAED 348
           GH ++ +EAK G  + I  + SV  G+G  D
Sbjct: 211 GHTLKDMEAKSGAKIAIRGKGSVKEGKGRSD 241


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 599 STLCAPKALAVSMVRRPMGPAPSTSTTCPAENSAP 495
           ST   P   + S       P PSTST+C    S P
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 368 STRKPRQILQARSRFLLQAS*SRDHGRRSATGAPRGGHSRVQEGRSS 508
           +T+K   IL+  ++ L   S   DHG+R    + R   +  Q+ R S
Sbjct: 340 ATQKSVSILKGHNKALSNVSLQEDHGKRRNLKSLRSSRNLHQQSRKS 386


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 584 PKALAVSMVRRPMGPAPSTSTTCPAENSAPLARVNAHRE 468
           P+A+ +  +   M P  +TS   PA++S+PL   N+ RE
Sbjct: 5   PEAMPLVTLSERMVPQVNTSPFAPAQSSSPLPS-NSCRE 42


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 280 SPACRVGTASSVRQDDTTYAPT*SSAPRPQYT-ETSSDITS 399
           S +  V ++SSV+   +T   + SSA  PQ T  TSS++ S
Sbjct: 465 SSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVS 505


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 494 EGRSSRRDTWCWYWER 541
           EG SS   T CW+W +
Sbjct: 363 EGYSSNEITHCWFWPK 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,557
Number of Sequences: 5004
Number of extensions: 53722
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)