Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31575
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 149 4e-37
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 41 2e-04
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 28 1.2
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.1
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 27 2.1
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 26 3.7
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 4.8
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 4.8
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 6.4
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 8.5
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 149 bits (360), Expect = 4e-37
Identities = 72/123 (58%), Positives = 90/123 (73%), Gaps = 2/123 (1%)
Frame = +2
Query: 227 VLVANRGEIAIRVFRACTELGIRSVAIYSEQDKLQMHRQKADESYIVGK--GLPPVEAYL 400
VLVANR EIAIRVFR EL + +VAIYS +D+L MHRQKADESY +GK PV AYL
Sbjct: 36 VLVANRSEIAIRVFRTAHELSMHTVAIYSYEDRLSMHRQKADESYPIGKVGQYSPVGAYL 95
Query: 401 SIPEIIRVAKENDVDAVHPGYGLLSERADFAQAIINAGLRFIGPSPKVVQQMGDKVAARK 580
+I EI+ +AK + VHPGYG LSE A+FA+ + AG++F+GPSP+V+ +GDK AR
Sbjct: 96 AIDEIVSIAKRTGANLVHPGYGFLSENAEFARKVNEAGMQFVGPSPEVIDSLGDKTKARA 155
Query: 581 AAI 589
AI
Sbjct: 156 IAI 158
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 40.7 bits (91), Expect = 2e-04
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Frame = +2
Query: 218 IRSVLVANRGEIAIRVFRAC---------TELGIRSVAIYSEQD-KLQMHRQKADESYIV 367
I S+L+AN G A++ R+ E I+ + + D K+ + + Y+
Sbjct: 69 ITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKFTVMATPDDLKVNADYIRMADQYVE 128
Query: 368 GKGLPPVEAYLSIPEIIRVAKENDVDAVHPGYGLLSERADFAQAIINAGLR--FIGPSPK 541
G Y ++ I+ +A+ +V AV G+G SE + + + + FIGP
Sbjct: 129 VPGGSNNNNYANVELIVDIAERMNVHAVWAGWGHASENPKLPEMLSASSKKIVFIGPPGS 188
Query: 542 VVQQMGDKVAARKAAIEAK 598
++ +GDK+++ A A+
Sbjct: 189 AMRSLGDKISSTIVAQSAR 207
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 281 ELGIRSVAIYSEQDKLQMHRQKADESYIVGKGLPPVEAYLSIPEIIRVAKENDVDAVHPG 460
+L I+S+ + + +A ES++V P E Y + I + ND A G
Sbjct: 20 DLSIKSIPSNEKNFSTEKSENEASESHVVDVVKDPFEQYTPEEQEILYKQINDTPAKLSG 79
Query: 461 YGLLSERAD 487
Y + AD
Sbjct: 80 YPRILSYAD 88
>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 115 GKIRFTRHSVAIPGVELGQNSDSCYGLED 201
GKI+F HSVA P ++ G + +D
Sbjct: 54 GKIQFDDHSVAGPAIDKGSKGEEFLSYDD 82
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 428 KENDVDAVHPGYGLLSERADFAQAII 505
++NDVD PGY +L DF I+
Sbjct: 79 RKNDVDHFRPGYWILDTNIDFFYEIM 104
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 275 CTELGIRSVAIYSEQDKLQMHRQKADESYIVGKGLPPVE 391
C+ELGI+++ D + +D +I+G P E
Sbjct: 87 CSELGIQNLTFLERTDLISWLEGSSDSEHIIGLEKPKPE 125
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 73 INKFTSINKNANTKGKIRFTRHSVAIPG 156
I T I N+N+K F R SV +PG
Sbjct: 546 IRSNTLIQLNSNSKDSTIFPRRSVTVPG 573
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 362 IVGKGLPPVEAYLSIPEIIRVAKENDVDAVHPGYGLLSERADFAQAIINAGLRFIGPSPK 541
I+ L P E L+I R+ D G +S +IN +RF +
Sbjct: 187 IIENHLLPNELPLTITNFFRLGTPGFTDPEVEANGAISRSFFLPDDVINTHVRFPTLTAN 246
Query: 542 VVQQMGDKVA 571
+ Q+ G KVA
Sbjct: 247 IRQRRGRKVA 256
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 496 LGEIGPFR*KTVAGMYGVNVVLLRNPDDLRDAEIGL 389
L E+ P+ + V G+ + +VLL+ P D A IGL
Sbjct: 1043 LREVKPYLVRNV-GIQELRIVLLQKPADKSSAAIGL 1077
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 267 NTRMAISPRFATRTLLIGLYSTIFESVA 184
N +A PR T LIGL+ + + SVA
Sbjct: 87 NVLVAQCPRMIVETQLIGLFQSNYTSVA 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,247
Number of Sequences: 5004
Number of extensions: 47895
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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