Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31573
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 39 0.004
12_01_0373 + 2897874-2898911 31 1.3
06_01_1179 + 10137652-10138038 31 1.3
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176... 29 4.1
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 29 4.1
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 29 5.4
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 28 7.2
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 7.2
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 7.2
03_02_0310 + 7315185-7316820,7318332-7318879 28 9.5
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 39.1 bits (87), Expect = 0.004
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = -2
Query: 776 ASATEVIND--EVSVGSKTIVAAPAVVVNDVIESSTG-ASATEVINDEVSVGSKTIVAAP 606
A+ TE+ D E SV ++ AA V V+E S AS+ E D+ +V K +
Sbjct: 475 ATETEIKEDSSEGSVTTEPTEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTA 534
Query: 605 AVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDE 432
+V + ES +S V + E SV + +AP +V + P ++ ASA E+I D
Sbjct: 535 SVSATEA-ESKEDSSEGSVASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDS 592
Query: 431 ALV 423
V
Sbjct: 593 TTV 595
>12_01_0373 + 2897874-2898911
Length = 345
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 439 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGAA 615
L+ ++A P S + TTT AAT T S+ TS T + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTSTT----SNGATSVTAAATAA 308
>06_01_1179 + 10137652-10138038
Length = 128
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/99 (24%), Positives = 45/99 (45%)
Frame = +1
Query: 421 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTT 600
+ A++ I++ A AP E + + AAT PT +S A + + +
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPT-VASAPRKAGPAAAPTTTVATSA 70
Query: 601 TAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 717
AG + + PT +++++ VA P + + F + AGA
Sbjct: 71 PAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108
>10_01_0154 -
1764554-1764727,1764829-1764927,1765710-1766172,
1766255-1766541
Length = 340
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -2
Query: 596 VNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALV 423
V DV SS V + N VS G+KT ++ P+V ++ + + T V+ND L+
Sbjct: 157 VEDVEISSQTLKVLTIKNTHVSYGNKTTISTPSVTY---LKLWSPLNGTYVLNDMPLL 211
>07_01_0010 +
72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/112 (20%), Positives = 43/112 (38%)
Frame = -2
Query: 770 ATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 591
ATE++ D V G ++N + A E+ N+ + G K + +V
Sbjct: 309 ATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVK 368
Query: 590 DVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVIND 435
+ +V+N+ G + +V+N + + AT V+ND
Sbjct: 369 GLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND 420
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = -2
Query: 632 GSKTIVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVN 486
G K+ + +PA+ + S+ S+T+ +N+EV+ +T+ AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2
Query: 737 GSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 591
G K+ + +PA+ + S+ S T+ +N+EV+ +T+ AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 620 IVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 441
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 440 NDE 432
++E
Sbjct: 333 SEE 335
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = -2
Query: 725 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASVTEVI 546
+ A A + DV+ +G V+ND+ G ++ VVV + G E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 545 NDEV 534
++E+
Sbjct: 333 SEEI 336
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 7.2
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Frame = +1
Query: 448 SVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVED--SITSF-TTTAGAAT 618
S LA +D +GS TTA A+ + E T + + + S + V+D SI+ + AG+
Sbjct: 3066 SAQLADGDDLVGSKDTTAAHASGLKELT-SGNYVASSSSHVVQDVTSISKMESVQAGSEE 3124
Query: 619 IVLEPTDTSSLITSVALAPVEDS-ITSFTTTAGAATIVLEP-TDTSSLITS 765
I +D + I S + PV + IT + A A I ++P +T + +T+
Sbjct: 3125 IYHGYSDET--IHSARIKPVVGTEITENASVASAPVITIQPDIETEAGVTA 3173
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 329 YSNLVALRYLKLLVQPQPRLL*WFLL 406
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
>03_02_0310 + 7315185-7316820,7318332-7318879
Length = 727
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 517 VLEPTD-TSSLITSVTLAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSIT 693
++ P D T+S++ + S+T T+ A + TD SL T + P + S
Sbjct: 530 IISPLDATNSILQFFKYGVTDYSVTGSTSKGILAAQASQSTDMRSLQTP-TITPPKSSFN 588
Query: 694 SFTTTAGAATIVLEPT 741
TTT+ T L+P+
Sbjct: 589 FKTTTSILDTDALKPS 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,894
Number of Sequences: 37544
Number of extensions: 263762
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -