Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31549
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 47 3e-06
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 32 0.097
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.1
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 27 2.8
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 26 4.8
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.4
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.4
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 8.4
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +2
Query: 32 KLLKEMRLSFPSGHSSFATFTMLYFCIYL--QKRFTWRGSKLLRHGIQFILLTFTWYTLM 205
K+L++ SFPSGH+SF+ + + I+L Q + + + + + L+ + +
Sbjct: 149 KVLQDGFRSFPSGHTSFSFAGLGFLAIFLAGQLKMFRNKTSSWKVVVPLVPLSIASWIGL 208
Query: 206 TRVSDYKHHWSDVLAGFSIGIIYAFVIY 289
+R DY+HH D+ G G A+V+Y
Sbjct: 209 SRSQDYRHHKEDIAVGALFGFAIAYVVY 236
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 31.9 bits (69), Expect = 0.097
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 185 FTWYTLMTRVSDYKHHWSDVLAGFSIGIIYAFVIYACVSNLRKT 316
F+W L+ R+ +Y H S + + +GI + F+I+ C S L K+
Sbjct: 8 FSWIGLVARIYNYIPHPS-IFSNAILGIAWLFLIFLCCSCLTKS 50
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 206 TRVSDYKHHWSDVLAGFSIGIIYAFV 283
T ++++ +W+DV AGF I I +F+
Sbjct: 200 TDITEWVKNWTDVAAGFLISFISSFL 225
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +2
Query: 65 SGHSSFATFTMLYFCIYLQKRFTW---RGSKLLRHGIQFILLTFTWYTLMTRVSDYKHHW 235
SGH T + L+ L + F++ G K + F LL W+ L S Y H
Sbjct: 159 SGHVFLLTHSSLFM---LSENFSFILNNGIKATSTKVLFGLLGLWWWMLFVTASFY-HTT 214
Query: 236 SDVLAGFSIGIIYAFVIYACVSNL 307
+ GF GI+ ++Y S +
Sbjct: 215 FEKCTGFFSGILEWSIVYVFSSRM 238
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 220 IGDAGHQRVPSEREQDELDTVTQQFRTAP 134
I DAGH + R + L+T+TQ F T P
Sbjct: 334 IPDAGHIPLRLPRAKALLNTITQNFGTLP 362
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 321 PAAPTATTRQNST*PTETATLASKSD*QMLTARDPAA 431
P+ PTATT +T + T AS S +T P A
Sbjct: 763 PSTPTATTISTTTSASGITTTASNSRDSFITRLPPTA 799
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 290 ACVSNLRKTRSCRSHSHHEAELHVTNGN 373
A SNLR++ + R S + +LH+ N N
Sbjct: 408 ASQSNLRRSNTVRPTSFYYEKLHIKNDN 435
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 8.4
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 216 PITSTTGATFWPVSVLELYTHLLFTLASRISVR---LDPAAPTATTRQNST*PTETATLA 386
P T T + S + YT L T + +S ++PAA T TT S T TLA
Sbjct: 719 PAAGTVTTTVY--SGTQEYTTTLATASGTVSGTVEVIEPAAGTVTTTVYSGSEVYTTTLA 776
Query: 387 SKSD 398
S S+
Sbjct: 777 SASE 780
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 90 NVANDECPLGNDSRISLSS 34
NV+ D LGN SRIS+ S
Sbjct: 998 NVSTDSVSLGNKSRISMDS 1016
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 74 SSFATFTMLYFCIYLQKRF-TWRGSKLLRHGIQFILLTFTWYTLMTRVSDYKHHWSD 241
S F F Y C YL KR+ W+ + L + ++ ++ + + KHH SD
Sbjct: 291 SLFILFFTKYMCQYLGKRYPRWQQAFFLTNTLRSAVVVIVGTAISYAIC--KHHRSD 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,632
Number of Sequences: 5004
Number of extensions: 63984
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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