Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31549
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
 Frame = +1

Query: 208 PRLRLQAPLERRSG--RFQYWNYIRICYLRLRLE---SP*DS---ILPLPQPPRGRTPRD 363
           PRLR +A  E   G  R  Y    R  + RLR E    P ++    +P P+PP  R  R+
Sbjct: 86  PRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRRE 145

Query: 364 QRKQP 378
              +P
Sbjct: 146 PEAEP 150


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 343 RGRTPRDQRKQPPSRPSLTNKC 408
           R R  R++ K+P    SL+N C
Sbjct: 290 RDRRERERSKEPKIISSLSNSC 311


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 356 HVTNGNSHPRVQV*LTNVDSSRSGSEVS 439
           HV N     R Q    NVDS RS +  S
Sbjct: 237 HVVNHEKALREQAKKMNVDSLRSNANTS 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,556
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)