Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31548
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...    27   9.5  
01_06_1589 - 38477318-38477411,38477833-38478863                       27   9.5  

>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -2

Query: 478 TTIPDRYANRTGLFIIRYRYIEKQNDIHRADIRAQVPTNKIKNTSYQTV 332
           T +PD YAN  G+ +  + +++        + +  +  +K  N S+Q +
Sbjct: 329 TILPDIYANSGGVIVSYFEWVQNIQGFMWDEEKVNMELHKYMNNSFQHI 377


>01_06_1589 - 38477318-38477411,38477833-38478863
          Length = 374

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 413 FDISVSYNKQTSSISIAVRYCRKDVNISESERPVSRRLG 529
           FD+ V +   T  I +AVR C  D+  +  ERP  R +G
Sbjct: 239 FDVYVFFKGFTPEI-LAVRVCAIDLGGAGDERPAFREVG 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,586
Number of Sequences: 37544
Number of extensions: 260589
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)