Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31544
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 372 QAAITYGSLTDTHTISATPSDFSLSAF 292
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 372 QAAITYGSLTDTHTISATPSDFSLSAF 292
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 372 QAAITYGSLTDTHTISATPSDFSLSAF 292
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 372 QAAITYGSLTDTHTISATPSDFSLSAF 292
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 414 PIPAATSSRLWTWAPICRRSEVSAPKGSRWS 506
           P+P A +  + + +  C++ + +A  GSR++
Sbjct: 564 PLPLARTPSVMSASSTCKKDKKNAGSGSRFT 594


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 309 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 211
           +  S   T+ G C+   PG+       + T+FP
Sbjct: 87  YQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFP 119


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 309 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 211
           +  S   T+ G C+   PG+       + T+FP
Sbjct: 87  YQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFP 119


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 409 HTHLSFNVVLSSPSRHHIRVINRHAH 332
           H +L  N V S+P  HH  + + H+H
Sbjct: 401 HNNL-LNNVYSTPGPHHHTMGHGHSH 425


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +2

Query: 221 VVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNIKGK 400
           V+ F +      GC   H P   QN D +  +     + +SV     +A  G  + I   
Sbjct: 317 VLFFGLVNNSAIGCWNEHQPLQRQNMDMVAQNEKTLQMIISVKIIQNLAYSGRMNRIHKN 376

Query: 401 VRMLA 415
             MLA
Sbjct: 377 EYMLA 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,598
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)