Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31540
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 28 1.6
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 27 2.1
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 2.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 2.7
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 27 2.7
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 6.3
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 6.3
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 8.3
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.3
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 25 8.3
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 65 CVLNSASRCHVFCLSSCRC 121
CVL RCH+ CLS +C
Sbjct: 496 CVLLGEIRCHIGCLSCTKC 514
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 352 GFNSKQLDSWLKYWAEEYPFA-ERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVP 528
G S+QL S++ +A E +K N Y +FK N+ L+++ ++ +V D
Sbjct: 366 GIVSRQLLSFIAPFAPTPESKQELEKLGNDYDYFKKNVVDLHLNLAQVLRRVSPDAPFTK 425
Query: 529 L 531
L
Sbjct: 426 L 426
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 27.5 bits (58), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 373 DSWLKYWAEEYPFAERQKFLNQY 441
++W YW YPF + K +Y
Sbjct: 39 ENWKSYWKSHYPFVKNDKGKKKY 61
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 299 SRNEDLSPLHWRVLASNTGSIR--NNWTVGSNI-GQKNTHSLKGRSS 430
S +E+L+P + LASNT ++ N+ + S+I G + T++L G+S+
Sbjct: 197 STSENLTPTSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKST 243
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +1
Query: 445 HFKTNIQGLNIHFMRITPKVPKDVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDR-NFA 621
H+KTN+ G IH + + K E ++ GS+ F+ SK NF
Sbjct: 110 HYKTNVLG-PIHVYQAFYPLVKKGESKIIVFTSSLVGSMGAFFPFNQSGYGQSKAALNFT 168
Query: 622 LEIIAPSLPGYGFSDAAVRPGLAAAEVA 705
++ I+ L GF ++ PG+ + A
Sbjct: 169 MKEISFELQDEGFIVISIHPGMVRTDSA 196
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 240 HQTLRDHFQ*DDGKRTKRTNQETKTFRPSIGGCWLQIRVQFETIGQLAQI 389
H TL D FQ + + K N K+FR + L++ + E + + A++
Sbjct: 86 HNTLEDVFQDIESYKPKSVNTSAKSFRQLVN--TLEVAFRKEQLRKFAKV 133
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 477 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQ 370
N+QTLD+SL L+K+ + +++ + EPT+Q
Sbjct: 98 NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQ 134
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 123 SAGVHTIVPPRSEESTADA*ARPGGVVG 206
SA T++PPR+E + A +P G G
Sbjct: 118 SANSSTVLPPRTENALHAASPKPSGSTG 145
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 627 FQSEVPVFADSCEMRNGFVELPDGARPS 544
F S ++ S +RNGFVE+ PS
Sbjct: 118 FSSSFTMYGQSLRLRNGFVEMISMKLPS 145
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 42 KLNDKAVSVCLIVHQDVTSSAYRLAAASAGVHTIVPPRS 158
KLN AV H+ + +A L +AG+ ++ PR+
Sbjct: 73 KLNQDAVQRMRANHEGIDRTAKELPFFAAGISMVIHPRN 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,758
Number of Sequences: 5004
Number of extensions: 62691
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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