Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31540
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889... 31 1.2
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 31 1.2
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796... 30 1.6
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 29 5.0
03_06_0149 - 31987183-31987630,31987813-31987874 29 5.0
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236... 28 6.6
04_03_0132 - 11647230-11647432,11647520-11647982,11648159-116482... 28 6.6
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 28 8.7
02_02_0113 + 6914562-6915260 28 8.7
>09_04_0447 +
17688248-17688319,17688414-17688515,17688852-17688981,
17689198-17689290,17689363-17689451,17689889-17689969,
17690118-17690207,17690653-17690772,17690877-17690927,
17691125-17691171,17691321-17691378,17691451-17691507
Length = 329
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 553 GSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYG 657
G VR+ YE+ HL V+ DR A + + S+P G
Sbjct: 23 GKVRDVYESGEHLVLVTTDRQSAFDRVLASIPFKG 57
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 526 PLLLLHGWPGSVREFYEAIPHLTAVSKDRNFALEIIAPSLPGYGFSDA 669
P+LLLHG+P + + A H D + +AP L GYG SDA
Sbjct: 36 PVLLLHGFP----QVWYAWRHQMRALADAGY--RAVAPDLRGYGDSDA 77
>10_08_0516 +
18478743-18478830,18478940-18479319,18479406-18479641,
18480280-18480538
Length = 320
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 433 NQYPHFKTNIQGLNIHFMRITPKVPKDVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDR 612
+Q H I+GLN+H ++ E+ ++ LHG+P E + + H +
Sbjct: 3 DQIEHLHLPIRGLNLHIAQVGKGEISLYELGTVVFLHGFP----EIWYSWRHQMLAAAAA 58
Query: 613 NFALEIIAPSLPGYGFS 663
+ +AP GYG S
Sbjct: 59 GY--RAVAPDWRGYGLS 73
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 565 EFYEAIPHLTAVSKDRNFALEIIAPSLPGYGFSD 666
EF P +S+D+ ALE+I P PG+ SD
Sbjct: 623 EFNVEFPESGVLSRDQCRALEMILPPKPGHQLSD 656
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 117 AASAGVHTIVPPRSEESTADA*ARPGGVVGTA 212
AA A + T+ PP +E+ A A G+VG A
Sbjct: 38 AADAHIETVAPPLEKEAVAAVLAAVAGIVGDA 69
>04_03_0448 -
16020773-16021066,16023040-16023291,16023470-16023605,
16023713-16023937,16024467-16024851,16025142-16025421
Length = 523
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 525 YYFNVFRDLWSNPHEVNIQTLDISLEMRILVKELLPFSEW 406
Y F R+ NP + + LD +L R+ +KEL S W
Sbjct: 184 YMFEYGREDGHNPVILELAKLDFNLLQRVHLKELKEISRW 223
>04_03_0132 -
11647230-11647432,11647520-11647982,11648159-11648271,
11648956-11649412
Length = 411
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 379 WLKYWAEEYPFAERQKFLNQYPHF 450
W KY+ + +A R FL YPHF
Sbjct: 344 WGKYFLVDSGYASRYGFLPSYPHF 367
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -3
Query: 443 GYWLRNFCLSANGYSSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLIRSFSSFTIVSL 264
G W NF + S + L QL E P P PS G + R + IV
Sbjct: 249 GVWC-NFRYEVFPFFSGRPLLQLPAFVETPP---PPPSPSATSGEKTKNRIGTVLAIVMP 304
Query: 263 KVISKGLMLVSCFC 222
+ + LM+V+CFC
Sbjct: 305 AIAAILLMVVACFC 318
>02_02_0113 + 6914562-6915260
Length = 232
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 114 AAASAGVHTIVPPRSEESTADA*ARPGGVVGTART 218
AAA AG +T ++A+A +RPGG G R+
Sbjct: 46 AAAGAGTNTTTKVMKRATSANAWSRPGGGGGVQRS 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,516,192
Number of Sequences: 37544
Number of extensions: 441295
Number of successful extensions: 1378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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