Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31537
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.6  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.9  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 575 HVNRLISIRLAVLMINVNKRSDKKKTITFFSSFCLLSFAT 456
           H++R+    L  +  N+N+ S K+KT TF+ S  L++F T
Sbjct: 681 HISRIQF--LTKIWDNLNRFSPKEKTSTFYLSNHLVNFVT 718


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 502 FFLSDRLFTLIIKTAKRIEMRRLTCN*KKSISIYVYIKMNCCLLVSLIKLENGSADLASF 681
           FFL      ++ +  +    + LT N  K  S+Y+YI          +++ N  A L +F
Sbjct: 37  FFLLQPRLEVLSQLLRECPKQELTVNGPKFHSMYLYISEILKSKAESLRIRNSLATLQTF 96

Query: 682 GLEL 693
             EL
Sbjct: 97  LAEL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,270
Number of Sequences: 5004
Number of extensions: 44339
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)