Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31535
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    28   1.1  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   4.6  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   8.1  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   8.1  

>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 252 FGVVVRARPLVETIEHLREPHHQTVIPDM--ECKVDCNRDRSE 130
           FG V++ +  V TIE+L   +   V+P +  EC   C +D+ E
Sbjct: 132 FGKVIQGKSTVRTIENLETKNDDPVVPVVIEECGT-CTKDQIE 173


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 155 LIVIEIVVNLSIGGTNSCLLCSTMSLNILLSLDF 54
           L +IE+++N+++  T  CLL   + + ++L + F
Sbjct: 782 LELIEVILNVNVSTTAMCLLTLLIGIYLILQVVF 815


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 563 QSREALPQDIIELNIALTIRLFVLLYTKYM 474
           QS + LP   ++    L + LF+L +TKYM
Sbjct: 273 QSLKHLPDTTVDAAFGL-VSLFILFFTKYM 301


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 250 EADICXVTSYVTRXGTHSAAAXCDSHIHS-DVFMESLITV-AXAIPXNXFAVLGMDXLGR 423
           EAD      Y+T     ++ + C   + S  V M   + +    IP    A+L +  LG 
Sbjct: 108 EADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMIPETIIAMLAIVRLGA 167

Query: 424 XFFLVFATFSAGS 462
              ++FA FSA S
Sbjct: 168 IHSVIFAGFSAES 180


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 260 MSASALSCVRDHSSKRLNISGNHIIRP*YPIWNVKLI 150
           +S +A+S +RD SS +  +     + P +P+   K I
Sbjct: 789 LSGAAMSVIRDESSLKDKLENASAVSPDHPVVITKFI 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,241
Number of Sequences: 5004
Number of extensions: 28692
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)