Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31529
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   1.9  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    28   5.9  
05_05_0321 + 24091997-24092530                                         27   7.8  

>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 194 VCTFQLHLEPPPWPALGVSLFASL 123
           V  FQ  + PPPWPA G + F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 54  ESDPRESNSFXLLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTD 194
           ESD +ES      +  LR++  R+  E+R+     R+  K+KLK  +
Sbjct: 220 ESDDKESKRRRKEEKRLRKEERRRRREERHRRKADRQASKLKLKHAE 266


>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +3

Query: 51  GESDPRESNSFXLLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKP 230
           G++ P  S+     + A    S RQ  ++  A +R  RRL+ +   +  S  GS   +  
Sbjct: 80  GQARPSSSSE---QEEAAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLL 135

Query: 231 STWVPGKVLRPXSMPR 278
           + +VPG + R  + PR
Sbjct: 136 NFYVPGLLTRSMTTPR 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,409
Number of Sequences: 37544
Number of extensions: 181457
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)