Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31529
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.5  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +3

Query: 39  CFRYGESDPRESNSFXLLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSK 218
           C R    + R+   +  L N   +    + + KRN+ SR R +   K +   R  + +SK
Sbjct: 4   CSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSK 63


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +3

Query: 39  CFRYGESDPRESNSFXLLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSK 218
           C R    + R+   +  L N   +    + + KRN+ SR R +   K +   R  + +SK
Sbjct: 4   CSRDRNREYRKDRRYEKLHNEKEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSK 63


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 237 WVPGKVLRPXSMPRTKVKIEEMNKMVQT 320
           W+   +L    +P+  +++EE N +  T
Sbjct: 509 WILENILDMLVLPKLTLEVEEWNPLTDT 536


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 245 WYPCAWLQIL*TAFHAPVC 189
           +YPC W +I  T     +C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 245 WYPCAWLQIL*TAFHAPVC 189
           +YPC W +I  T     +C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 302 HLFDLNFGPRHRXWP 258
           HL DL+  P HR  P
Sbjct: 54  HLMDLSSPPEHRDLP 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,171
Number of Sequences: 438
Number of extensions: 2035
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)