Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31527
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.90 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   0.90 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.4  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 33  RYGESDPRESNSF*LLKNALRRKSARQGKRKAKRLKQAKEEAQD 164
           RY  S  RE NS+   KN    +  R+  ++  R K+ +E +++
Sbjct: 38  RYSRSREREQNSY---KNEKEYRKYRERSKERSRDKRERERSKE 78


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 33  RYGESDPRESNSF*LLKNALRRKSARQGKRKAKRLKQAKEEAQD 164
           RY  S  RE NS+   KN    +  R+  ++  R K+ +E +++
Sbjct: 38  RYSRSREREQNSY---KNEKEYRKYRERSKERSRDKRERERSKE 78


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 255 IDAETKVKIEEMNKMVQTQXEAVIKDVL-NL---VYDIKPELHINYRLN*AKLL 404
           ++A  ++K E   K V  +   V+  ++ N+   +YDI PE+ +   L  AK+L
Sbjct: 539 VNATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIYDILPEVDVEEILGEAKVL 592


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 234 WYPCAWLQIL*TAFHAPVC 178
           +YPC W +I  T     +C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 234 WYPCAWLQIL*TAFHAPVC 178
           +YPC W +I  T     +C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +2

Query: 80  EKRAAEKVSEAREAKSETPKAGQGGGS 160
           EK+  +++ E +E+K++  +  + GG+
Sbjct: 212 EKKKEDEIDEGKESKTKLSQWRKDGGT 238


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 33  RYGESDPRESNSF*LLKNALRRKSARQGKRKAKRLKQAKEEAQD 164
           RY  S  RE NS+   KN    +  R+  +   R +  +E +++
Sbjct: 260 RYSRSREREQNSY---KNEREYRKYRETSKGRSRDRTERERSKE 300


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 33  RYGESDPRESNSF*LLKNALRRKSARQGKRKAKRLKQAKEEAQD 164
           RY  S  RE NS+   KN    +  R+  +   R +  +E +++
Sbjct: 271 RYSRSREREQNSY---KNEREYRKYRETSKGRSRDRTERERSKE 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,441
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)