Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31525
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.83 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   2.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 274 SYYQNKIIDIKNDCCWSVPVHAS 342
           S Y N ++DI+N+ C S   + S
Sbjct: 306 SLYTNIVVDIRNEDCGSAIAYVS 328


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 205 GHCRQLGPSMVPAAVARKRRASSCV 131
           G C++  P++VP  +  K  A  CV
Sbjct: 48  GRCQRFCPNVVPKPLCIKICAPGCV 72


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 205 GHCRQLGPSMVPAAVARKRRASSCV 131
           G C++  P++VP  +  K  A  CV
Sbjct: 48  GRCQRFCPNVVPKPLCIKICAPGCV 72


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 167 RRNHRGPELAAMPVRHHPYHSVRSTDCRI 253
           +R HR      + ++  P    RST+ R+
Sbjct: 597 KREHRSSSTKGITIQEPPQWHTRSTEKRV 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,275
Number of Sequences: 438
Number of extensions: 2444
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)