Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31523
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...   109   2e-25
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    29   0.45 
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    29   0.45 
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    27   1.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   1.8  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   3.2  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   4.2  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   4.2  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   7.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   9.7  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    24   9.7  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score =  109 bits (262), Expect = 2e-25
 Identities = 63/145 (43%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
 Frame = +1

Query: 1   KLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVNMIKE 174
           KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI+EVNM KE
Sbjct: 5   KLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVNMFKE 64

Query: 175 DGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAA 354
           DG VI+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L+++A  +  
Sbjct: 65  DGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAEQLKV 124

Query: 355 PK------PLEEDDEVPNLVGNFDE 411
            +         +D E+P+LV  FDE
Sbjct: 125 SEGEKGADAQADDGEIPDLVEKFDE 149


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 277 MLPGILSQLGPDGLNRLKRIASSVAAPKPL---EEDDEVPNLVGNFDEASKQEAKEVVTN 447
           ++P + SQLG D ++ +K + + +   K L   EE   + NL+   D  S   AK  +  
Sbjct: 130 LIPDVRSQLGFDFVSPIKTVYNVLEKHKLLGLLEEKQLLNNLLKQSDPQSNANAKAELLK 189

Query: 448 EKEK 459
           E+E+
Sbjct: 190 EREE 193


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 372 FLEWLRRGNTRRNPFQSVQAVGSELAEDT 286
           F++WL  GN+ R PF       SE  E+T
Sbjct: 126 FVDWLGMGNSSRPPFDIKGQTASEKVEET 154


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +1

Query: 205 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAAPKPLEEDDEV 384
           + + +L++   A+      ++    +   ++ LGPD  ++ K I SS      L+ +D +
Sbjct: 211 RPEEALSSLKTALDSQPNYEEALSNMTTAITDLGPDAPSQAKNILSSFTNSSTLKLNDHL 270

Query: 385 PNLVGNFDEASKQ 423
                 FD  S Q
Sbjct: 271 NEKAQEFDTFSTQ 283


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 292 LSQLGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNF-DEASKQ 423
           +S +G +  +  K++A      + +E++DE  NL G+F +E++KQ
Sbjct: 420 VSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTKQ 464


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 301 LGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAKEVVTNEK 453
           +G  G+   + I   VA    LE+   +PN V N D      +++    E+
Sbjct: 194 IGMGGMAEWRNIVGRVADKLQLEQKSVLPNAVKNIDGQDDDSSEQTAAFEE 244


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 332 GLRRVLPRLSHSRKTTRYLTSSATLTKPQ 418
           GL+R   RL H  K+TRY+ ++A +   +
Sbjct: 26  GLKRFGCRLYHHSKSTRYIDATAKVVSQE 54


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 397 GNFDEASKQEAKEVVTNEKE 456
           GN  EAS+ E +EV  N KE
Sbjct: 632 GNMSEASESELEEVFKNPKE 651


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 325 LKRIASSVAAPKPLEEDDEVPNLV-----GNFDEASKQEAKE 435
           +KR+ S V   +PL  ++E+ N V     G  DE  ++E +E
Sbjct: 166 VKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEERE 207


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 301 LGPDGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEASKQEAKEVVTNEK 453
           L  D   RL R  + +   +P EE   V + + +FD+ +  E  E VTN+K
Sbjct: 247 LSDDEWLRLHR--TRIKEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDK 295


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 317 KPSGPSWLRIPGSISVVCLFSPCPVIANVF 228
           +PS PS L++    ++VC+ +  P+   +F
Sbjct: 126 QPSQPSMLQVAAMKTLVCIMADRPLAIRLF 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.128    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,980
Number of Sequences: 5004
Number of extensions: 33943
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)