Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31520
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.52 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 104 LYYYKC*NVITS-EPPGPGARSPNSACRGTPRVPL 205
           L Y++   V+ S +PP P   +  SAC G+   PL
Sbjct: 166 LTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPL 200


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 159  LAHRTVPVVARRASPSPLL 215
            L HR +P V R ++P+P++
Sbjct: 1099 LHHRDLPCVLRASTPAPVV 1117


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +2

Query: 134 TSEPPGPGA---RSPNSACRGTPRVPLPSPP 217
           +S  PGP     +SP +  RG+P  P   PP
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -3

Query: 242 HASRRAL-TGEERGGGRAACHDRHCSVSELRDRAALTL*HFNTYSSKVRKVEKTRTETGL 66
           H  R ++  G   G  R+   +  CSV   + + +++     T ++K   +E+T ++   
Sbjct: 308 HRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKCSQ 367

Query: 65  RGSEY 51
               Y
Sbjct: 368 TSVHY 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,177
Number of Sequences: 438
Number of extensions: 2321
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)