Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31519
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   2.3  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   2.3  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   5.4  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   5.4  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    24   7.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   9.4  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 261 IPYIFNLIWFNLGILFFLCLTSLGVY 338
           + +I + +WF   ILFF+ +T   VY
Sbjct: 214 LSWIASKLWFRFFILFFIIITGTIVY 239


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 79  LRYIQIRKGPNKVGFIXLLQPFSDAIXLFTK 171
           L+   + KG   VGF   L PF D+I  F K
Sbjct: 582 LKSYLVPKGFQLVGFYGTLGPFMDSIGFFIK 612


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 306 FFLCLTSLGVYIVIIAGWA 362
           F LC + LG + + + GWA
Sbjct: 106 FMLCASLLGTFSLFLMGWA 124


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 300 ILFFLCLTSLGVYIVIIAGWASNSN 374
           ILF   + SL +Y + +A WAS S+
Sbjct: 41  ILFRYTVCSLAIYTIGMAVWASRSS 65


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  WNEKFYVIFRFEKGLIRW 118
           WN +FYV+F   K ++ W
Sbjct: 182 WNHRFYVLFETSK-VVSW 198


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 267 YIFNLIWFNLGILFFLCLTSLGVYIVI 347
           Y+F L++F +GI F    + LGV I++
Sbjct: 95  YVF-LLFFKMGIKFLSFASLLGVLIIM 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,240
Number of Sequences: 5004
Number of extensions: 7465
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)