Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31518
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     31   0.17 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   2.7  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   2.7  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    26   4.8  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   4.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   6.3  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   6.3  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = -2

Query: 417 YFVPFLLFLTLHINFITFSEW------SMYISFYNI 328
           YF P L+F+TL     TF++W      S YISFY I
Sbjct: 12  YFFPLLVFITLQYPRWTFNKWKALLPVSAYISFYFI 47


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 116 IWSGILSIIAATIFTIQ*LGSNSKNKTYEPVIL-LKKLG 3
           +WS +L+++   +FT+  L  N+ N +Y+P  L + K+G
Sbjct: 703 VWSTVLAVLQRDVFTLYNL--NTPNLSYDPKDLDISKVG 739


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +1

Query: 166 ELENDERIATIITDLITLSNEVDSVAFGPSEN------------FKKISITFDDHWYIIC 309
           ++++ ERI  ++ D IT S   DS+   P EN              K  I +  +WY + 
Sbjct: 102 DIDSSERIR-LVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDIKWSKYWYQLL 160

Query: 310 LSNKK 324
           L NKK
Sbjct: 161 LGNKK 165


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = -2

Query: 432 GYSSKYFVPFLLFLTLHINFITFSEWSM-----YISFYNINLF 319
           G+ +K+F   L+ +    NFI  S WS+     Y  FY  + F
Sbjct: 231 GFKAKFFAAVLVLILSVANFIINSFWSVPRESPYRDFYRYDFF 273


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 96  HYSCNDFHNSVTWKQQQK 43
           HY+ N FH+ + W  QQ+
Sbjct: 916 HYNANIFHDFINWGAQQR 933


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 471 IIFVLKY*KTRFQGYS-SKYFVPFLLFLTLHINFITFSEWSMYISFYNINLFIRKTDNIP 295
           I+  LKY  T F   S +  F   LL L    +F+T+S WS  +   +  L +    NI 
Sbjct: 105 ILSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNIT 164

Query: 294 MIV 286
           + +
Sbjct: 165 LFL 167


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 30/102 (29%), Positives = 40/102 (39%)
 Frame = +1

Query: 76  KIVAAIMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPS 255
           K V AI   +   IGY V    GAVL      E D R   ++ D  +L   +  ++    
Sbjct: 407 KDVTAISQVLWGSIGYSVGAMFGAVLAVHDSKEPDRRTILVVGD-GSLQLTITEISTCIR 465

Query: 256 ENFKKISITFDDHWYIICLSNKKIYIVKRNIHTPLRESNEIN 381
            N K           II + N   Y ++R IH      NEIN
Sbjct: 466 HNLKP----------IIFIINNDGYTIERLIHGLHASYNEIN 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,438
Number of Sequences: 5004
Number of extensions: 59991
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)