Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31515
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    69   3e-14
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.91 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.8  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 68.9 bits (161), Expect = 3e-14
 Identities = 28/42 (66%), Positives = 36/42 (85%)
 Frame = +2

Query: 197 VDKLVMPYVSTVPKNLISPCDNCAAPYGFRNQMSLSKDTDFF 322
           V+K+VMPYVST+PK+L  PCD CAAPYG++N M+LS+DT  F
Sbjct: 1   VEKVVMPYVSTMPKSLKEPCDGCAAPYGYKNIMTLSQDTSHF 42


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 382  WEKQFLRFYVGMRFCNLNXPYL 447
            W  + L +YVG R  +   PY+
Sbjct: 1005 WNGEILGYYVGYRLSSSEKPYM 1026


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 13  SNAKAYVCLFPGSRLSRRSVLSYGSQ*VHEERQREAQC 126
           S  K + C   G  L  ++ L       H ERQ E +C
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRC 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,550
Number of Sequences: 438
Number of extensions: 2560
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)