Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31514
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 45 4e-06
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 40 1e-04
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 30 0.089
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 0.63
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 26 1.9
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 1.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 1.9
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 2.5
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 3.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.4
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 25 4.4
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 44.8 bits (101), Expect = 4e-06
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +3
Query: 240 PSHIKVNLXALSPTMESGSIVSWEKKEGDKLTEGDL 347
P+H +N+ ALSPTM +G+I +++KK GDK+ GD+
Sbjct: 51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDV 86
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 39.9 bits (89), Expect = 1e-04
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 261 LXALSPTMESGSIVSWEKKEGDKLTEGDL 347
+ ALSPTME G+I W KEGD GD+
Sbjct: 40 MPALSPTMEEGNITKWHFKEGDSFKSGDI 68
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 30.3 bits (65), Expect = 0.089
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 165 LXHAQNQTVLSTPQWTVQMXYYSSLPSHIKVNLXALSPTMESGSIVSWEKKEGDK 329
L Q Q +++ P W + YY +P H + L T+ S WE++ G++
Sbjct: 257 LRFTQRQILMNDPYWN-RGFYYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNR 310
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.5 bits (58), Expect = 0.63
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 150 VTNKLLXHAQNQTVLSTPQWTVQMXYYSSLPSHIKVNLXALSP-TMESGSIVS 305
V+NK L HAQ + S P Q + S PS + +++P T+E+G++ S
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNLHS 226
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 1.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 87 DHRLRFDSVTQLFATLSIFFTKTIPVPDE 1
D R +F+S +F + + KTI +PD+
Sbjct: 5 DKRAKFESALPVFVDEIVNYLKTINIPDD 33
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 1.9
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +3
Query: 63 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLXHAQNQTVLSTPQWTVQMXYYSSLP 242
++ L D + IRS ++ LA +V + L + + V T QW +M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 243 SHIKVNLXALS 275
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 90 KKAIRSNITRCISTELAKRKVTN 158
K A+R+NI RC+ T + + N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 35 IDNVANNCVTESNLKRWS*ESYTVEH 112
I+NVANN + L WS Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 105 SNITRCISTELAKRKVTNKLLXHAQNQTVLST 200
S +++C LA++++T L A QTV T
Sbjct: 461 SELSKCHEASLAEKQLTYNLAMEALEQTVRET 492
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 180 NQTVLSTPQWTVQMXYYSSLPSHIKVNLXALSPTMESGSIVSWEKKE 320
N + +TP W V+ S+L + + + AL P+ V KK+
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQ 692
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 11 TGIVLVKNIDNVANNCVTESNLK 79
TGIV + +N AN VT +N+K
Sbjct: 43 TGIVKAEQWNNEANKWVTSNNIK 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,904
Number of Sequences: 5004
Number of extensions: 24998
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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