Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31504
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    29   0.40 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.53 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   2.2  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   2.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   2.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 199 PSVTPAPPQQFVTVVPAQQMGP 264
           P   P P  Q+VT++PA+++GP
Sbjct: 280 PDHIPGPDAQWVTILPARKLGP 301


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
 Frame = +1

Query: 184 LYPAVPSVTPAPPQQFVTVVPAQQMGPE------PTNTSCPSCSAAIVTR-------VDH 324
           LYP V   TP P   ++ V+P     P+      PT+  CP C   +  R       +++
Sbjct: 629 LYPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILEN 688

Query: 325 VPVTKTHLFALLLC--LIGC----CPCACIP--YCTDSCK 420
            P  + ++    LC  L+ C    C   C P   C  SCK
Sbjct: 689 QPCYRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCK 728


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 190 PAV-PSVTPAPPQQFVTVVPAQQMGPEPTNTS-CPSCSAAIVTRVD 321
           PA+ P VTPAPP    T        P P  +S  PS   A +T  +
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHAN 766


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 436 CPNCNAYIGSYK 471
           CP CN+ IGSYK
Sbjct: 289 CPKCNSKIGSYK 300


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 193 AVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSC 294
           A PSV+P P QQ        +    PTN +  SC
Sbjct: 533 AKPSVSPMPLQQSTGKTEVAKRAQFPTNVNYSSC 566


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 303 NRHQSRSRASD*NPPVCFASLPNRLLPMCLYPLLHGLLQRC 425
           N H+   R++D N P+C   + N    +      H L QRC
Sbjct: 258 NTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRC 298


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = +1

Query: 268 PTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNC 447
           PT++S P  +    T    VP T T + +  L    C     +PY +           NC
Sbjct: 415 PTSSSTPLTTTNCTTSTS-VPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNC 473


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 330
           P +PS   APP       PAQ   P  +  S PS  +A+      VP
Sbjct: 158 PPIPS--KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEP 270
           P VP V   P +  V VVP     P+P
Sbjct: 641 PVVPEVPSVPQRPAVPVVPEAPSVPQP 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,211
Number of Sequences: 5004
Number of extensions: 39687
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)