Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31504
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0313 + 2216498-2216953 32 0.31
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128... 31 0.71
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 30 0.94
02_03_0221 - 16554910-16555560 29 1.6
07_03_0600 + 19866757-19867218,19867920-19868429 29 2.2
04_04_0138 + 23067885-23068245,23068393-23068634 29 2.2
07_01_0310 + 2209084-2209554 29 2.9
03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085 29 2.9
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 28 3.8
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928... 28 3.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 5.0
07_01_0312 + 2214050-2214556 28 5.0
06_03_0854 + 25400855-25403741,25406174-25407708 28 5.0
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 28 5.0
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 5.0
10_06_0036 - 9914606-9915561,9916287-9916368 27 6.6
04_01_0079 + 886004-886531 27 6.6
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 6.6
10_01_0334 - 3680612-3681266,3682253-3682374 27 8.8
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 27 8.8
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 27 8.8
03_05_0632 + 26264150-26264195,26266139-26266623,26266650-262667... 27 8.8
02_02_0358 + 9373440-9373500,9375106-9375632 27 8.8
02_02_0356 + 9336558-9337091 27 8.8
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 27 8.8
01_05_0534 + 22999876-23000333,23000835-23000949 27 8.8
>07_01_0313 + 2216498-2216953
Length = 151
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 330
PAVP VT PP + VPA M P P + P+ + + V VP
Sbjct: 67 PAVPKVT-LPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVP 112
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRV 318
P VP+VT PP V VPA + P P + P + + V
Sbjct: 81 PTVPAVT-MPPMPAVPAVPAVTLPPMPAVPTVPPNTVVVPAAV 122
>08_02_0497 -
17811413-17811529,17811644-17811724,17812693-17812815,
17812945-17813193
Length = 189
Score = 30.7 bits (66), Expect = 0.71
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 138 ASTKSASVQQPDTARSIPGRSFRHPR-APPAVRYSCSG 248
A +AS+ A ++PGR+FR PR + P SC G
Sbjct: 2 AMAAAASLLPASAAPTLPGRAFRPPRNSTPTASLSCDG 39
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 141 STKSASVQQPDTARSIPGRSFRHPRAPPAVRYSC--SGTTNGP 263
S + A ++ +A S+ GRSF +P A RYS T+NGP
Sbjct: 338 SRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGP 380
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 352 ALLLCLIGCCPCACIPYC-TDSCKDA 426
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 288
P P P PPQQF +P QQ P P + + P
Sbjct: 76 PPPPQYAPPPPQQF--QLPHQQYAPPPQHYAPP 106
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 202 SVTPAPPQQF-VTVVPAQQMGPEP-TNTSCPSCSAAIVTRVDHVPV 333
S P+ P VT P QQM P P T++ P S+ + D VPV
Sbjct: 142 STAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSSGLKLIADCVPV 187
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 297
PAVP+VT PP + +PA + P P + P+ +
Sbjct: 23 PAVPAVT-LPPMPAIPAIPAATLPPIPAVPTVPNAA 57
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 190 PAVPSVT--PAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 330
PAVP V P P V VPA + P P + P+ + + V VP
Sbjct: 62 PAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAVPTATLPPMPAVPAVP 110
>03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085
Length = 252
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMG----PEPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL 357
P PS P P QQ T P QQ P+ P+ +A+ D V + T F +
Sbjct: 28 PRPPSAQPPPEQQPPTPTPTQQQSMQAQPQARPRRAPAAAASGADSTDWVATSLTRRFGI 87
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 291
PA S TP+ Q PA + PEP + PS
Sbjct: 548 PAAGSSTPSSSQAMTAAAPAPPLPPEPPSPRHPS 581
>02_03_0408 -
18692176-18692278,18692590-18692669,18692764-18692890,
18694016-18694051,18695832-18696085
Length = 199
Score = 28.3 bits (60), Expect = 3.8
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Frame = +1
Query: 241 VPAQQ--MGPEPTNTSCPSCSAAIVTRV---DHV--PV---TKTHLFALLLCLIGCCPCA 390
VP QQ P C +C AA V+ + D + PV +K L +++ C++
Sbjct: 57 VPLQQTMFRDTPAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGV 116
Query: 391 CIPYCTDSCK-DANHYCPNCNAYIGSYK 471
C + C HYCP+C + +K
Sbjct: 117 CFLCPSMDCLWHKYHYCPSCGEKVAEFK 144
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 184 LYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 291
+YP+ P VTP+PP+ P + + P T PS
Sbjct: 432 VYPSPPEVTPSPPEIAPYPSPPEIVPSPPEITPYPS 467
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 184 LYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 291
+YP+ P VTP+PP+ P + P T PS
Sbjct: 556 IYPSPPEVTPSPPEITPYPSPPEVTPGPPEITPYPS 591
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 187 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 291
YP+ P +TP+PP+ P + + P T PS
Sbjct: 589 YPSPPEITPSPPEITPYPSPPEVVPSPPKITPYPS 623
>07_01_0312 + 2214050-2214556
Length = 168
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 297
P VP+VT PP + VPA + P P + P+ +
Sbjct: 43 PTVPAVT-LPPMPAIPAVPAATLPPMPAVPTVPNAA 77
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 196 VPSVTPAPPQQFVTVVPAQQMGPEPTNT 279
VP PAPP V +VP P PT++
Sbjct: 299 VPVQVPAPPSSDVALVPVPVQVPAPTSS 326
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 379 NNLLGKEAKQTGGF*SLARDLLW*RLPHCMKGS 281
++L E + GG SL+R +L +P C+KGS
Sbjct: 171 DSLHDDELSRNGGILSLSRSILKLGVPECLKGS 203
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGP 264
PA P+ +P PP V PAQQ P
Sbjct: 93 PAAPASSPHPPPPSAPVAPAQQGEP 117
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 196 VPSVTPA--PPQQFVTVVPAQQMGPEPTNTSCPSCSAA 303
VPSV PA PP V VVPA P + + P +AA
Sbjct: 190 VPSVPPAAAPPSTPVVVVPAPATSPPMSMPATPPEAAA 227
>04_01_0079 + 886004-886531
Length = 175
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 117 VWRALRTASTKSASVQQPDTARSIPGRSFRHPRAPPA 227
VWR R + A+ + + ARS+P + RHP P A
Sbjct: 109 VWRGWRRSLEALAA--EDEAARSVPDLAGRHPAVPGA 143
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSA 300
P P++ PP Q+ +P Q+ P P + PS A
Sbjct: 281 PPPPTLQSQPPSQYPGHLPHSQVPPVPPSAPVPSVPA 317
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 165 QPDTARSIPGRSFRHPRAPPAVR--YSCSGTTNG 260
QP AR++ GRS+R PR + R Y G+ G
Sbjct: 132 QPSAARTLAGRSWRSPRGAGSGRGCYRRGGSREG 165
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 291
PA S TP+ Q PA PEP + PS
Sbjct: 393 PAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPS 426
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTN 276
PA P P PPQ P QQ P P +
Sbjct: 66 PASPPPAPTPPQTRPPSPPPQQQQPRPVS 94
>03_05_0632 +
26264150-26264195,26266139-26266623,26266650-26266739,
26266821-26267189
Length = 329
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 150 SASVQQPDTARSIPGRSFRHPRAPPAVRYSCSGTTN 257
+A V + A P R+ H PP + CS T N
Sbjct: 236 AARVTEAAMATPSPARAMNHLPVPPEIEVRCSPTNN 271
>02_02_0358 + 9373440-9373500,9375106-9375632
Length = 195
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 499 LLTQLKYLAICSFQCTRCNSDSNGLHLCRSPCSKG 395
LLT L+ L ++C R S GLHL S C+ G
Sbjct: 113 LLTSLRNLEF--YECHRLQSLPEGLHLLSSICTLG 145
>02_02_0356 + 9336558-9337091
Length = 177
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 499 LLTQLKYLAICSFQCTRCNSDSNGLHLCRSPCSKG 395
LLT L+ L ++C R S GLHL S C+ G
Sbjct: 95 LLTSLRNLEF--YECHRLQSLPEGLHLLSSICTLG 127
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 499 LLTQLKYLAICSFQCTRCNSDSNGLHLCRSPCSKG 395
LLT L+ L ++C R S GLHL S C+ G
Sbjct: 1188 LLTSLRNLEF--YECHRLQSLPEGLHLLSSICTLG 1220
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 190 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 297
PA P ++P P ++ P P P + PS S
Sbjct: 49 PAAPPLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,686
Number of Sequences: 37544
Number of extensions: 301727
Number of successful extensions: 1317
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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