Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31504
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   3.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.8  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 120 RQIGFLFIMGHFDLVSRITKCFIPELFN 37
           +Q+  +   GH D++ +  K  +PE+ N
Sbjct: 35  KQLHCILDRGHCDVIGKKIKELLPEVLN 62


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 198 SFRHPRAPPAVRYSC 242
           +F H R PP +  SC
Sbjct: 474 AFSHSRCPPEIHKSC 488


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 198 SFRHPRAPPAVRYSC 242
           +F H R PP +  SC
Sbjct: 474 AFSHSRCPPEIHKSC 488


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 108 FLFIMGHFDLVSRITKCFIPELFNE 34
           FLF++   D   RI    +PE++++
Sbjct: 20  FLFVIAAQDSSGRIFTICVPEIYSK 44


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 108 FLFIMGHFDLVSRITKCFIPELFNE 34
           FLF++   D   RI    +PE++++
Sbjct: 20  FLFVIAAQDSSGRIFTICVPEIYSK 44


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 108 FLFIMGHFDLVSRITKCFIPELFNE 34
           FLF++   D   RI    +PE++++
Sbjct: 20  FLFVIAAQDSSGRIFTICVPEIYSK 44


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 274 NTSCPSCSAAIVTRVDHVPVTKT 342
           +T+  +CS A+  + + VP+T +
Sbjct: 513 STATSTCSLAVAKQQNQVPLTSS 535


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 204 RHPRAPPAVRYSC 242
           RH R  PA +Y C
Sbjct: 397 RHSRPVPAKKYDC 409


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 204 RHPRAPPAVRYSC 242
           RH R  PA +Y C
Sbjct: 397 RHSRPVPAKKYDC 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,975
Number of Sequences: 438
Number of extensions: 2900
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)