Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31502
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 71 6e-13
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 69 3e-12
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 64 7e-11
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 55 4e-08
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 34 0.12
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 30 1.9
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 29 2.5
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 2.5
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 3.3
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 28 5.8
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/87 (35%), Positives = 56/87 (64%)
Frame = +1
Query: 376 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 555
+ A+ G+G+F +LA G+ SE M+++ +SF+ S Q + +L+ Q + + S++F
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVF 94
Query: 556 IGMMVGAYAWGSVADSLWSQASAHKPS 636
+GM+VGAY+WG V+D+ + + A PS
Sbjct: 95 VGMLVGAYSWGIVSDN-YGRRQAVMPS 120
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/74 (36%), Positives = 51/74 (68%)
Frame = +1
Query: 382 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIG 561
A+ +G+GR+ ++L+ G+ +E M+++ +SF+ PS Q + LT+ + + SI+F+G
Sbjct: 15 ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVG 74
Query: 562 MMVGAYAWGSVADS 603
M++GAY WG V+D+
Sbjct: 75 MLIGAYTWGVVSDN 88
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 64.5 bits (150), Expect = 7e-11
Identities = 26/82 (31%), Positives = 51/82 (62%)
Frame = +1
Query: 355 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG 534
N E + A+E G+G+F ++LA G+ E M+++ +SF+ P + + +++ + +
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENES 254
Query: 535 WLNSIIFIGMMVGAYAWGSVAD 600
L+S++F GM++GA WG V+D
Sbjct: 255 LLSSVVFAGMLIGASGWGFVSD 276
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/89 (28%), Positives = 52/89 (58%)
Frame = +1
Query: 334 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLD 513
++ E+ E + A+ G+GRF ++LA + +E M+V+ +SF+ PS + +
Sbjct: 6 AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWG 65
Query: 514 LTTQTKGWLNSIIFIGMMVGAYAWGSVAD 600
++ +G ++S++F GM++GA G ++D
Sbjct: 66 VSGAAEGLVSSVVFAGMLIGACLGGLISD 94
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 617 ACDQSESATEPQAYAPTIIPMKIILFSHPLV*VVRSKSHCAEGR--MNDIEMTSISSEVL 444
A E PQ P I+LF P++ VR++ + E D++M I VL
Sbjct: 205 ATSLDEEDVPPQEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVL 264
Query: 443 TRP 435
TRP
Sbjct: 265 TRP 267
>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 505 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSL 606
D L+ G S++ IG M+GA G +ADSL
Sbjct: 1019 DFGLSNSEYGVFGSVLTIGAMIGALTSGRLADSL 1052
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 418 MLLAVCGLVSTSEEMDVISMSFILPSAQC---DLDLTTQTKGWLNSIIFIGMMVGAYAWG 588
M++A G+ + +S+ + P+ DL L+ SII IG M+GA A G
Sbjct: 23 MVIASTGVAVLGSFVFGVSIGYSAPTQSKIREDLQLSLSEYSVFGSIITIGAMIGAVASG 82
Query: 589 SVAD 600
+AD
Sbjct: 83 HLAD 86
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 413 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 505
T CCW + AL R WT R RS H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 435 RSRQHFRGDGRHLDVVHPTLGTVRLRPHHSD*RMA---KQYNLHR 560
RS H + D H T+GT R+ PHHS R+A +Y HR
Sbjct: 826 RSYAHVQVDSPGTATRH-TVGTTRITPHHSRDRLATVRDEYPTHR 869
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 505 DLDLTTQTKGWLNSIIFIGMMVGAYAWGSVADSLWSQAS 621
DLDLT S+ +G MVGA A G +A+ + + S
Sbjct: 93 DLDLTLSEFSVFGSLSNVGAMVGAIASGQMAEYIGRKGS 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,152,311
Number of Sequences: 37544
Number of extensions: 459318
Number of successful extensions: 1238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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