Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31502
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   4.5  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 625 EHSLATKASLPLNPK 581
           E SL+ K  LPLNPK
Sbjct: 1   ESSLSLKDILPLNPK 15


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 111 TGKLYAVGSATTPSERRLSVPATTIQ 188
           +G+L+  GSA  P E+    P T  Q
Sbjct: 26  SGELFKAGSAEQPKEQEPLPPVTPPQ 51


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 425 WQYAVSSALPRRWTSSRC 478
           W +   S LP + TSSRC
Sbjct: 68  WIHVDISFLPEKSTSSRC 85


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +3

Query: 453 RGDGRHLDVV 482
           +GDGRH++V+
Sbjct: 205 KGDGRHMEVI 214


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 580 AWGSVADSLW 609
           AWG V +SLW
Sbjct: 417 AWGFVGNSLW 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,605
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)