Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31501
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   6.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 87  QRQATKDAGTISGLNVMRIINEPTAAAIAYG 179
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 239 KGSTTQIKD*NILLSFLLVKAIGDSCSSRLINDSHYIKT 123
           KG     +D    +S L +K    SC    +N +H+  T
Sbjct: 166 KGVYFAFRDQGACISILAIKVYYISCPEISVNFAHFPAT 204


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 243 HQRFHHPNQRLEH 205
           H   HH  Q L+H
Sbjct: 351 HHHHHHQTQSLQH 363


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 228 GGTFDVSLLTIDNGVFEVVATNGDTHL 308
           GG + +  +  D G +EVV +   T+L
Sbjct: 21  GGDYSLDEIEWDGGDYEVVESRELTNL 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,709
Number of Sequences: 438
Number of extensions: 1789
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)