Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31499
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 29 2.6
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.5
02_04_0166 - 20508656-20509092,20509282-20509372 29 3.5
11_06_0156 + 20748472-20748951 29 4.6
01_01_0082 + 625198-625719 29 4.6
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 8.0
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.0
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 28 8.0
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 28 8.0
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 28 8.0
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 28 8.0
01_01_0306 + 2499350-2499678,2500041-2500137 28 8.0
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 414 NVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQXCQRGHPA-GFAR 590
N + ST C GS ++ + + GGPLT GS R + G A G P G +
Sbjct: 369 NCLQRSTPCFLGSPKTASFAVNCGGPLTSGSDNLRYQSDEVNLGDASYYITGEPTWGVST 428
Query: 591 VTSF 602
V F
Sbjct: 429 VGRF 432
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 161 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 69
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 VDGSNGRSTCSGDSGGPLTIGSGGSR-QLIGITSFGSAQXCQRGHPA 578
V GS+ R + G SGG G GG+R Q+ + + G+A RG+ A
Sbjct: 31 VRGSHARRSKRGISGGAGCGGGGGARGQVTAVGASGAAAEDARGYDA 77
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 345 CWLPKQHRRSFRSRQPRPKY 286
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = -1
Query: 589 LAKPAGWPLWQX*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPST 440
L P G P DV+P PP P V PP SP V P P+T
Sbjct: 40 LPSPCGTTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPVAYP-PPTT 88
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 12 CGASLLTNTRSVTAAHC 62
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 91 SSPSLLAQLTSSPEAPGSPPP 153
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 607 ELKDVTLAKPAGWPLWQX*ADPNDVIPIS*RLPPLPMVRGPPESP 473
E D L + PL + DP DV+ + PP P GPP+ P
Sbjct: 143 ECVDTWLDAHSTCPLCRSRVDPEDVLLLP--EPPKPSTTGPPDPP 185
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -1
Query: 580 PAGWPLWQX*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRP 455
PA P Q A P IP+ PP V+ PP P+QV P
Sbjct: 65 PAPSPQQQRVASPPPTIPVKFS-PPAAPVKVPPPPPVQVPPP 105
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 544 PNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEP 446
P +IP+ P P V PPE +Q++RP+ P
Sbjct: 517 PPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMP 549
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = -1
Query: 529 PIS*RLPPLPMVRGPP---ESPLQVLR-PLEPSTQRVEAMITLFPNVRAQTALVMTWRLT 362
P+ +L P+P+ + P S + VL P +P +++ I A M WRL
Sbjct: 96 PVMPKLNPVPLPKQPQFVHHSDMHVLHTPADPMHYQLDPCI-------ATEGSAMVWRLC 148
Query: 361 WRFCWLLAPEAAS 323
+ CW + EA +
Sbjct: 149 FECCWPWSSEATN 161
>01_01_0306 + 2499350-2499678,2500041-2500137
Length = 141
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 592 TLAKPAGWPLWQX*ADPNDVIPI 524
TL + WP+WQ D N ++P+
Sbjct: 119 TLGELMDWPIWQPSQDLNSILPV 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,084,176
Number of Sequences: 37544
Number of extensions: 373003
Number of successful extensions: 1840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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