Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31498
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   1.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   2.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   8.0  

>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 458 VGRYRLRRIENVIKAPTPSFNATFLKRPCE*GLRGHWMLASISLN 324
           + R   R +  VIK PTPSF      R    G RG W    ++ N
Sbjct: 420 IPRLNYREVNKVIKNPTPSFLLDAATR----GKRGTWTKVPVTRN 460


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/90 (21%), Positives = 42/90 (46%)
 Frame = -1

Query: 272 TRIAFSLLQSSITICNTIYPEKGSHCNRESPAYDINTSLYQITWPSSQLERYIRSTNTIS 93
           TR + SLL+ S +     + + G+H + ++  +  +++L   T   +  +    +    +
Sbjct: 101 TRASQSLLRRSSSFFRRRHRKNGTHASTDNNPFSESSTLQPQTAERTSQQAVRSAITETT 160

Query: 92  DPSFGVVINTISH*YSSTLIIFHNTTQTRL 3
           +PS  V  +  +   S+ +II H  +Q  L
Sbjct: 161 NPSVSVQNSNSTSTSSAAMIIPHRDSQNSL 190


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = -1

Query: 350 WM---LASISLNT*VLVWPCRRLAR--TDRCTRIAFSLLQSSITICNT-IYPEKGSHCNR 189
           WM   + S++    VL + C  LA+  + + TR++  L    +      ++PEK +   R
Sbjct: 685 WMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVLR 744

Query: 188 ESPAYDINTSL 156
              +Y I+TSL
Sbjct: 745 PHISYIISTSL 755


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 121 LSSCDDGQVIW*SEVFMSYAGL-SRLQ*DPF 210
           LSS D+G+ IW  + F ++ G+   +Q  PF
Sbjct: 46  LSSFDNGEKIWVEDAFTTFFGIPDVIQLSPF 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,008
Number of Sequences: 5004
Number of extensions: 57418
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)