Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31498
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    29   4.8  
12_01_0016 + 125052-127145                                             28   6.3  
11_06_0181 + 20985960-20987825,20987904-20989169                       28   6.3  
11_01_0016 + 126373-128004                                             28   6.3  
12_02_1199 + 26928685-26929671                                         28   8.4  

>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = -2

Query: 289 LAPIAAHVLPFRFYNRPLQYATRFIQRKDLTATV 188
           LA IA+HV+ F       QY +RFIQ+K  TATV
Sbjct: 711 LAEIASHVVEFSAD----QYGSRFIQQKLETATV 740


>12_01_0016 + 125052-127145
          Length = 697

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 350 WMLASISLNT*VLVWPCRRLARTDRCTRIAFSLLQSSITICNTIY 216
           W     +L   VL+  C R  R D   R+   +L S +T C T +
Sbjct: 232 WNAPPDALTYNVLIKMCARAGRKDLVARVLHRILSSGLTPCATTF 276


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/77 (20%), Positives = 41/77 (53%)
 Frame = -3

Query: 462 KRWALQITSHRERYKSANAEF*RDVFKTSVRMRA*GSLDAGVYITEHMSLGVALSPSRSH 283
           K W++Q++SH +RY+S   +         V++ + GS+D GV ++  + +   +S     
Sbjct: 693 KGWSMQLSSHADRYQSYGYDI--------VQVLSSGSMDDGVTVSPLVRIAGFVSLFAKV 744

Query: 282 RSLHTYCLFAFTIVHYN 232
           ++   + + +  ++H++
Sbjct: 745 KNESCFSISSCEVLHFS 761


>11_01_0016 + 126373-128004
          Length = 543

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 350 WMLASISLNT*VLVWPCRRLARTDRCTRIAFSLLQSSITICNTIY 216
           W     +L   VL+  C R  R D   R+   +L S +T C T +
Sbjct: 78  WNAPPDALTYNVLIKMCARAGRKDLVARVLHRILSSGLTPCATTF 122


>12_02_1199 + 26928685-26929671
          Length = 328

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = +3

Query: 183 ALTVAVRSFLWINRVAYCNGRL*KRKGNTCAAIGASETATGPHQDSCVQ*YRRQHPMTPK 362
           A+TVA  S  WI  V   + RL  R  +T AA  A+E          V   R     TP+
Sbjct: 127 AVTVASLSLFWIESVRSSSSRLRPRPRSTPAAETAAE-LPDLRGRGVVSPIREAAAATPR 185

Query: 363 PSFA 374
           PS A
Sbjct: 186 PSSA 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,824,903
Number of Sequences: 37544
Number of extensions: 351519
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)