Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31495
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 28 5.5
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 28 5.5
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 28 5.5
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 28 5.5
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 28 5.5
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 28 5.5
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 28 5.5
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 28 5.5
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 27 9.6
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 611 AKKEISQRFDNDKSRFIEVWDIIDKRW 637
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 572 AKKEISQRFDNDKSRFIEVWDIIDKRW 598
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 506 AKKEISQRFDNDKSRFIEVWDIIDKRW 532
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 408 AKKEISQRFDNDKSRFIEVWDIIDKRW 434
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 653 AKKEISQRFDNDKSRFIEVWDIIDKRW 679
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 197 IGALLSSNSFLNI*IKATQQMLTNKKNQTTLESNHSD 307
+G +L SFL I I+ QQ+ ++ TT+ SN +D
Sbjct: 884 LGVILEVLSFLRIFIRHRQQLENVPQHTTTVHSNQAD 920
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 633 AKKEISQRFDNDKSRFIEVWDIIDKRW 659
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 184 AKKEIGKKYQ*GASKFMYLFDFFD*RW 104
AKKEI +++ S+F+ ++D D RW
Sbjct: 506 AKKEISQRFDNDKSRFIEVWDIIDKRW 532
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -3
Query: 570 ESVMTCLERRRLFTIRSTGSGM*LLAATTRGILMSCRXSQSGSMMPTVDTYSLKRNNNTV 391
ESV+ R + TG G +L + + + +SG + TVDT LK N +
Sbjct: 205 ESVLNLAAARATY---GTGDGSTILISCSEATDIKIWHGKSGKELGTVDTNQLKNNMADI 261
Query: 390 LQQSEFI 370
FI
Sbjct: 262 SPNGRFI 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,772
Number of Sequences: 37544
Number of extensions: 290638
Number of successful extensions: 579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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