Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31493
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    28   5.6  
12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799...    27   9.7  

>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 185 VTMAAPPFKPKRITASRQK*AMWWHLPARTHKRSYHQHILRHNYNS*T 328
           + +AAP  + +      +K    WH P   HK+ YH   L H Y+  T
Sbjct: 460 IVIAAPSGRQRFPGTVIKKRCCGWHQPLGNHKQ-YHPQFLHHLYSERT 506


>12_02_0702 -
           22278513-22278751,22279054-22279889,22279932-22279975,
           22280350-22280463
          Length = 410

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 545 LPNSERIFQIDSVVSEPIQYKQT 613
           +PN  ++F+ D  +SEP+  K T
Sbjct: 54  IPNQHKVFKDDERISEPVSIKST 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,148
Number of Sequences: 37544
Number of extensions: 318641
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)