Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31490
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 27 0.47
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 0.82
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 1.9
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 1.9
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 2.5
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 2.5
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 3.3
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 7.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 7.7
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 7.7
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 23 7.7
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 0.47
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 58 EMANRGT--KLCFDIVRTYSTAKMPPTDF 138
E+ANR KLC+ I++ A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 0.82
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 154 TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 243
+G SY+ V+ + VY+ PS + A KKP ++
Sbjct: 977 SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 1.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 167 YEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCFSVEAIAIC 24
+E P+ L K V + +L L ++ PL+ I+ EA+A C
Sbjct: 246 FENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVDGEALAAC 293
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 1.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 221 PIRSRCFSPRGTCSGYTTTT 280
P R+ C+SP G Y T T
Sbjct: 36 PARNACYSPNGKLFAYATAT 55
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 2.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 133 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 234
D P P PS Q + MPP +T Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 2.5
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 208 SITNAYKK-PVLLTQGHMQWLYXNDGKRYLD 297
+I + Y + PV+ +G +L+ +G++Y+D
Sbjct: 46 NIISVYARYPVVAAKGEGSYLFDKEGRKYID 76
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 3.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 178 LLVGTKVPCTVWARNPSAAFWPC 110
+ VGT +WA P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 203 RLQSRTPIRSRCFSP 247
R RTPIRS FSP
Sbjct: 518 REHGRTPIRSNTFSP 532
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 3 FGTRSSVTYCNRLNRE 50
F T+S + YCNRL +E
Sbjct: 1297 FSTKSVLWYCNRLFQE 1312
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 212 IEGGM*TPFICSTCWYEGPVYGLGTKSVG 126
I G F + W+E P GLGT +G
Sbjct: 315 ISGWSNNNFDAYSYWHESPNMGLGTVGMG 343
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 212 IEGGM*TPFICSTCWYEGPVYGLGTKSVG 126
I G F + W+E P GLGT +G
Sbjct: 315 ISGWSNNNFDAYSYWHESPNMGLGTVGMG 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,559
Number of Sequences: 5004
Number of extensions: 25312
Number of successful extensions: 77
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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