Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31484
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.070
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.21 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.21 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   0.86 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   2.6  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   2.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   4.6  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   4.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   6.1  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    25   6.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   6.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    24   8.0  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    24   8.0  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    24   8.0  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.070
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 209 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 352
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 182 TMQVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 328
           T  VKH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 737 TPAVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 29/101 (28%), Positives = 43/101 (42%)
 Frame = +2

Query: 89  SHVHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQ 268
           S ++ TTS T T +S SST   +  T  + A+  + +         S I   VS   P+ 
Sbjct: 198 SSLNSTTSATATSSSLSSTAASNSATSSSLASSSL-NSTTSATATSSSISSTVSSSTPLT 256

Query: 269 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINS 391
              S T   +AS   +S   +  S+  S T   T + S NS
Sbjct: 257 SSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANS 297



 Score = 24.2 bits (50), Expect = 8.0
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
 Frame = +2

Query: 89  SHVHGTTSMTPTKASPSST------FKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVS 250
           S ++ TTS T T +S SST         S  T  A +              L P   P S
Sbjct: 230 SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSS 289

Query: 251 PVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 352
              P+    S T T  +S P TS  S   +  SS
Sbjct: 290 --TPLSSANSTTATSASSTPLTSVNSTTTTSASS 321



 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 269 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINS 391
           PLTS   T + S   T+P+ +  SV  + +   T + S NS
Sbjct: 390 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANS 430



 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 269 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINS 391
           PLTS   T + S   T+P+ +  SV  + +   T + S NS
Sbjct: 504 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANS 544


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 28  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 195
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD +SQ
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 227 SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINS 391
           SP +   +PV P QPL  L  + T   P +  +   L++PS+   D     + NS
Sbjct: 281 SPFF--TAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNS 333


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +1

Query: 10  APSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYA 189
           +PSV+I     +EIP  +       + + A DY+  T     I++V  ++  + S   Y 
Sbjct: 84  SPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSSSPYE 141

Query: 190 SQASAVAQTA 219
           +  SA++  A
Sbjct: 142 NILSALSLAA 151


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +2

Query: 206 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 322
           +P P  +S P Y     +PVSP +PV P +S       + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 113 MTPTKASPSSTFKRS*RTWPARAT-MQVKHQRWPKPPELSPIYLPV 247
           M P + S  S +  S   W    T M+V   R+P PPE SP  +P+
Sbjct: 246 MAPERISGGS-YTISSDIWSLGLTLMEVALNRFPFPPEGSPPPMPI 290


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +2

Query: 209 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDK 367
           P PP + P  LP  P M +  +         + P T+    N SVP   +  K
Sbjct: 424 PFPPFMMP-GLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPPSSLHK 475


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 295 DGVRSGNFAGFRQSLGPFFG---HVGQNLNLINQL 390
           + ++S     F++ L  FFG   H G+ LNL+N L
Sbjct: 23  NAIKSSKKKPFQKHLLVFFGSGGHTGEMLNLLNAL 57


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 223 IIAHLSAGIPGDACAAANVINSYTDGVRSGNFA-GF 327
           +I   +A +  D  A  N+I+ Y   +  GNFA GF
Sbjct: 646 LIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 681


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = +1

Query: 61   IDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLS 240
            ++D K    IS+++ ++    +S     +  I+K  A  GD   +A  +     I+  + 
Sbjct: 870  VNDPKLIPYISKSYAFLAYLYQSKPTSVLDTIIKRAAESGDPNCRAVLILAVGHILKKVG 929

Query: 241  AGIP 252
            +G+P
Sbjct: 930  SGVP 933


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 34  YSDNEIPRDIDDGKASSVISRAWDYV 111
           Y+D+E P D +  K S+++ +A+ +V
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFV 183


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 61  CRVEFHYHCID*W 23
           C   FH+HCI  W
Sbjct: 74  CNHAFHFHCISRW 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,432
Number of Sequences: 5004
Number of extensions: 32678
Number of successful extensions: 102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)