Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31484
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 33 0.12
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 33 0.12
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 30 0.63
08_01_1010 - 10215625-10216335,10216372-10216473 30 0.63
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 30 0.83
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316... 29 1.1
12_02_0077 - 13288916-13289659,13289689-13289691 29 1.4
06_03_1310 + 29238644-29240260 29 1.4
12_02_0307 - 17311673-17312032 28 3.3
08_02_0602 + 19183549-19184919 28 3.3
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 3.3
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 27 4.4
11_06_0610 - 25449085-25453284 27 4.4
01_06_0696 + 31296016-31296141,31296197-31296295 27 4.4
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161... 27 5.8
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 27 5.8
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 27 5.8
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 5.8
12_02_0414 + 18824347-18825161,18826018-18828229 27 7.7
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 27 7.7
04_04_1542 - 34264994-34265331,34266195-34267029 27 7.7
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.7
03_01_0298 + 2318836-2319051,2321238-2323106 27 7.7
01_06_1217 + 35485182-35485949 27 7.7
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQP 271
P A M ++HQ P PP+ +P ++P V P P
Sbjct: 45 PGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 209 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 313
P+PP+ SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 30.3 bits (65), Expect = 0.63
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 169 ASQGDYASQASAVAQTAGIIAHLSAGIPG 255
A G AS+ + V +T G+++ +S+G+PG
Sbjct: 99 APAGRAASKGAGVGETLGVVSRVSSGVPG 127
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 30.3 bits (65), Expect = 0.63
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = +2
Query: 107 TSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLT 286
T TP + + S + S T P RA P P SP Y P+SP P + +
Sbjct: 150 TPSTPQRHAASPDYTPSTPTPPRRAASLDYTPSTPPPRAASPDYTPLSP-----PPRAAS 204
Query: 287 LTQTASGPETSPASDNLSVPSSDTW 361
+ S P SP + +S W
Sbjct: 205 PEYSPSTPPPSPVPSDAESGTSPLW 229
Score = 28.3 bits (60), Expect = 2.5
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = +2
Query: 104 TTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSL 283
+T TP +A+ S + S T P RA P P SP Y P + P P +
Sbjct: 90 STPTTPRRAA-SPDYTPSTPTPPRRAASPDYTPSTPPPRAASPDYTPST---PTPPRRAA 145
Query: 284 TLTQTASGPETSPASDNLSVPSSDT 358
+ T S P+ AS + + PS+ T
Sbjct: 146 SPNYTPSTPQRHAASPDYT-PSTPT 169
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.9 bits (64), Expect = 0.83
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 116 TPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPV 256
TPT PSST S P + KHQ+ P PP + + P PV
Sbjct: 83 TPTPPPPSSTASSS---LPPPTPLLPKHQQAPPPPPPTQSHQPPPPV 126
>10_06_0146 +
11230357-11230364,11230847-11230893,11231535-11231642,
11231789-11231828,11231995-11232757
Length = 321
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -3
Query: 354 SEEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSGGLGHR*CLTC 187
S++ +++L +GE++ ND ++ + DNS G HR C C
Sbjct: 213 SQQQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNC 268
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 351 EEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSGGLGHR*CLTC 187
+E +++L +GE++ ND ++ + DNS G HR C C
Sbjct: 141 QEQSQQLGISGEINSDTNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNC 195
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +2
Query: 110 SMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPK--PPELSPIYLPVSPVMPVQPLTSL 283
S +A+P +T + RT A + H P+ PP P P +P P T
Sbjct: 358 SKAQCQATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYS 417
Query: 284 TLTQTASGPETSPASDNLSVPSSDT 358
+++ P TSP S + + P S +
Sbjct: 418 ESPKSSMPPSTSPPSSHGASPPSSS 442
>12_02_0307 - 17311673-17312032
Length = 119
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 310
PA A + V RWP+PP +L + + P T + SGP
Sbjct: 66 PAHAQVAVDGARWPRPPRHPARHLTLPLCLRRVPPTQQPPHRPGSGP 112
>08_02_0602 + 19183549-19184919
Length = 456
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 193 QASAVAQTAGIIAHLSAGIPGDACAAANVINS 288
QA+A + + A L AG+ DACA +V +S
Sbjct: 192 QAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 229 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFF 351
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 176 RATMQVKHQRWPKPPE--LSPIYLPVSPVMPV 265
R + H R P PP LSP+ LP+ P PV
Sbjct: 454 RMKCKYHHPRSPVPPAGALSPLGLPIKPDQPV 485
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 4.4
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = +2
Query: 116 TPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSL---T 286
+PT +SP S K + PA + + PP S +LP SP P T
Sbjct: 478 SPTPSSPESPAKMAPPPAPAIKGVTSPPAEYGAPPPPSSGWLPKSPERKKAPPPQAEPPT 537
Query: 287 LTQTASGPETSPASDNLSVPS 349
+ PE+SP + S P+
Sbjct: 538 EYSPPATPESSPPPEGKSPPT 558
>01_06_0696 + 31296016-31296141,31296197-31296295
Length = 74
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 162 GHGQPGRLCKSSISGGPNR 218
GHG+P L +SSIS P+R
Sbjct: 16 GHGRPALLTRSSISSEPHR 34
>05_07_0167 +
28115290-28115349,28115952-28115996,28116087-28116179,
28116259-28116342,28116949-28117131,28117234-28117276,
28117671-28117891,28118060-28118137,28118404-28118529,
28118616-28118825
Length = 380
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 56 ATLMMEKLVP*SHVHGTTSMTPTKASPSSTFKRS 157
A ME +P SH+ G+T++ P + P+ + S
Sbjct: 175 AAAKMENALPPSHILGSTAILPNHSFPAQVIRPS 208
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 197 HQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSD 355
H +P PP L P+ P S L +S P+TS A D S SD
Sbjct: 383 HHHFPLPPSQLMPQLGTLPISPPLAAVSDKLWDWSSVPDTSTARDYDSSGFSD 435
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPV--MPVQPLTSLTLTQTASGPETSPASDNLSV 343
PAR Q + Q P PP+ +PI P +P+ P QP T+ A P +P + S+
Sbjct: 411 PAR---QHQPQPTPPPPQAAPI--PAAPLQQQPPQPQHKETIHHEAVTPRRAPPTSGSSL 465
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 40 DNEIPRDIDDGKASSVISRAWDYVDDTDK--SIAILNVQEILKDMA 171
+N P D+ +G + +I+R V +TD+ ++ + +I++D+A
Sbjct: 459 ENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLA 504
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 390 ELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITG 250
E+++ + LSHV T +E + +RV D+ GCTGITG
Sbjct: 574 EMVEGLD-LSHVRSL-TAAGTELSDFKLKRCKVLRVLDLDGCTGITG 618
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 178 GDYASQASAVAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRS 309
GDYA A+A A A + + A G+ + + N DG+R+
Sbjct: 87 GDYAEPATAAAAAAAATSLMEAEEYGEMMESVDEANFALDGLRA 130
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 154 ILKDMASQGDYASQASAVAQTAGIIAHLSAGIP 252
+L+D DY S+ +A A T G A SA +P
Sbjct: 138 LLRDYKKVRDYESRVAAAAATGGAAAANSAPLP 170
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 209 PKPPELSPIYLP-----VSPVMPVQPLTSLTLTQTASGPETSPASDN 334
P PE +P+ +P +P + P+T+ T+ + P T+PA N
Sbjct: 295 PLYPEPTPVTMPDPTTTTTPTPFMNPVTAPTMPSPVTNPATTPAVTN 341
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 76 LFHHQCRVEFHYHCI 32
LF +C EFH+HCI
Sbjct: 89 LFTAECSHEFHFHCI 103
>01_06_1217 + 35485182-35485949
Length = 255
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 104 TTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPV 265
+T++ ASP +F S +A + H P PP+L P P SP + V
Sbjct: 23 STALAAAAASPRLSFS-SPSLKDLQALLLSDHSPSPTPPQLPPNTAPCSPSVRV 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,029
Number of Sequences: 37544
Number of extensions: 257991
Number of successful extensions: 823
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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