Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31484
(410 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein pr... 35 0.12
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 32 0.64
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 32 0.64
AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1... 32 0.64
Z34282-1|CAA84036.1| 98|Homo sapiens mucin protein. 31 1.1
Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein. 31 1.1
BC018708-1|AAH18708.1| 434|Homo sapiens zinc finger CCCH-type c... 31 1.5
AK027357-1|BAB55059.1| 434|Homo sapiens protein ( Homo sapiens ... 31 1.5
U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein. 31 2.0
L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein. 31 2.0
BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for IM... 31 2.0
BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,... 31 2.0
AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,... 31 2.0
L12141-1|AAA58477.1| 347|Homo sapiens fork head-related protein... 30 2.6
Z34276-1|CAA84030.1| 94|Homo sapiens mucin protein. 29 4.5
BT006720-1|AAP35366.1| 350|Homo sapiens forkhead box A3 protein. 29 4.5
BC016024-1|AAH16024.1| 350|Homo sapiens forkhead box A3 protein. 29 4.5
AY157990-1|AAN76325.1| 1778|Homo sapiens myeloid/lymphoid or mix... 29 4.5
AY147037-1|AAN17675.1| 1858|Homo sapiens MLL5 protein. 29 4.5
AK223473-1|BAD97193.1| 350|Homo sapiens forkhead box A3 variant... 29 4.5
AK128234-1|BAC87344.1| 167|Homo sapiens protein ( Homo sapiens ... 29 4.5
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ... 29 4.5
AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens ... 29 4.5
AF519459-1|AAM74947.1| 1858|Homo sapiens MLL5 protein. 29 4.5
AF176114-1|AAD51980.1| 350|Homo sapiens hepatocyte nuclear fact... 29 4.5
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 29 4.5
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 29 4.5
AL117481-1|CAB55954.1| 319|Homo sapiens hypothetical protein pr... 29 6.0
X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II transactiv... 29 7.9
U31931-1|AAA92364.1| 353|Homo sapiens class II MHC mutant RJ2.2... 29 7.9
U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivat... 29 7.9
EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major histoco... 29 7.9
DQ217660-1|ABB29845.1| 1759|Homo sapiens castor long variant pro... 29 7.9
BC051883-1|AAH51883.2| 1166|Homo sapiens castor zinc finger 1 pr... 29 7.9
BC045631-1|AAH45631.1| 999|Homo sapiens TNRC6C protein protein. 29 7.9
BC025330-1|AAH25330.1| 1025|Homo sapiens C14orf43 protein protein. 29 7.9
BC015668-1|AAH15668.1| 1024|Homo sapiens C14orf43 protein protein. 29 7.9
BC006511-1|AAH06511.1| 1036|Homo sapiens C14orf43 protein protein. 29 7.9
BC004410-1|AAH04410.2| 614|Homo sapiens CASZ1 protein protein. 29 7.9
AY084055-1|AAM15724.1| 326|Homo sapiens MHC class II transactiv... 29 7.9
AL139423-3|CAI22571.1| 1166|Homo sapiens castor zinc finger 1 pr... 29 7.9
AL139423-2|CAI22570.1| 706|Homo sapiens castor zinc finger 1 pr... 29 7.9
AK127785-1|BAC87133.1| 1019|Homo sapiens protein ( Homo sapiens ... 29 7.9
AK056421-1|BAB71179.1| 582|Homo sapiens .-). protein. 29 7.9
AK000328-1|BAA91089.1| 1044|Homo sapiens protein ( Homo sapiens ... 29 7.9
AF410154-1|AAL04118.1| 932|Homo sapiens MHC2TA protein. 29 7.9
>AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein
protein.
Length = 580
Score = 34.7 bits (76), Expect = 0.12
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +2
Query: 89 SHVHGTTSMTPTKASPSSTFKRS*RT-WPARATMQVKHQRWPK--PPELSPIYLPVSPVM 259
SH + + TP +ASP+ R+ T P R +++ H+ P PP SP P
Sbjct: 206 SH-RASPTRTPPRASPTRRPPRASPTRTPPRESLRTSHRASPTRMPPRASPTRRPPRASP 264
Query: 260 PVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT 370
P + +T + P T P + + PS + +T
Sbjct: 265 TGSPPRASPMTPPRASPRTPPRASPTTTPSRASLTRT 301
Score = 29.1 bits (62), Expect = 6.0
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 113 MTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLT 292
MTP +ASP + + S T P+RA++ + W P +P + +M ++ S+T T
Sbjct: 274 MTPPRASPRTPPRASPTTTPSRASL-TRTPSWAS-PTTTP---SRASLMKMESTVSITRT 328
Query: 293 QTASGPETSPA 325
+ P +P+
Sbjct: 329 PPRASPTGTPS 339
Score = 28.7 bits (61), Expect = 7.9
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Frame = +2
Query: 116 TPTKASPSSTFKRS*RTWPARATMQVKHQRWP-------KPPELSPIYLP-VSPVMP--V 265
+PT+ P + + S R P R + R P PP SP+ P SP P
Sbjct: 228 SPTRTPPRESLRTSHRASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPRASPRTPPRA 287
Query: 266 QPLT-----SLTLTQTASGPETSPASDNL 337
P T SLT T + + P T+P+ +L
Sbjct: 288 SPTTTPSRASLTRTPSWASPTTTPSRASL 316
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 32.3 bits (70), Expect = 0.64
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Frame = +2
Query: 89 SHVHGTTSMTPTKASPSSTFKRS*RTWPARA-TMQVKHQRWPKPPELSPIYLPVSPV-MP 262
S+ + TPT S T + T P + T PK SP Y P SPV P
Sbjct: 1845 SYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTP 1904
Query: 263 VQPLTSLTL-TQTASGPETSPASDNLS--VPSSDTWDKT 370
P S T T + + P+ SP S S P T+ T
Sbjct: 1905 TSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT 1943
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 32.3 bits (70), Expect = 0.64
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Frame = +2
Query: 89 SHVHGTTSMTPTKASPSSTFKRS*RTWPARA-TMQVKHQRWPKPPELSPIYLPVSPV-MP 262
S+ + TPT S T + T P + T PK SP Y P SPV P
Sbjct: 1845 SYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTP 1904
Query: 263 VQPLTSLTL-TQTASGPETSPASDNLS--VPSSDTWDKT 370
P S T T + + P+ SP S S P T+ T
Sbjct: 1905 TSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT 1943
>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
protein.
Length = 3530
Score = 32.3 bits (70), Expect = 0.64
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 209 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNL 337
PKP L+P L +P +P++P+ + L Q + PET+ S L
Sbjct: 2518 PKP--LAPAPLAKAPRLPIKPVAAPVLAQDQASPETTSPSPEL 2558
>Z34282-1|CAA84036.1| 98|Homo sapiens mucin protein.
Length = 98
Score = 31.5 bits (68), Expect = 1.1
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +2
Query: 101 GTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 280
GTT S +S S + P +T PE +P SPV P TS
Sbjct: 3 GTTPSAVPTTSITSAPTTSTNSAPISSTTSATTTSRISGPETTP-----SPV-PTASTTS 56
Query: 281 LTLTQTASGPETSPA----SDNLSVPSSDT 358
+ T T SGP T+P+ + +SVP++ T
Sbjct: 57 ASTTSTTSGPGTTPSPVPTTSTISVPTTST 86
>Z34278-1|CAA84032.1| 279|Homo sapiens mucin protein.
Length = 279
Score = 31.5 bits (68), Expect = 1.1
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +2
Query: 101 GTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTS 280
GTT S +S S + P +T PE +P SPV P TS
Sbjct: 157 GTTPSAVPTTSITSVPTTSTNSAPISSTTSATTTSRISGPETTP-----SPV-PTASTTS 210
Query: 281 LTLTQTASGPETSPA----SDNLSVPSSDT 358
+ T T SGP T+P+ + +SVP++ T
Sbjct: 211 ASTTSTTSGPGTTPSPVPTTSTISVPTTST 240
>BC018708-1|AAH18708.1| 434|Homo sapiens zinc finger CCCH-type
containing 10 protein.
Length = 434
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +2
Query: 209 PKPPELSPIYLPVSPVMPV-----QPLTSLTLTQTASGPETSP-ASDNLSV 343
P P ++P+ + V+PV PV QPL +T++ T + T P AS ++ +
Sbjct: 379 PPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRI 429
>AK027357-1|BAB55059.1| 434|Homo sapiens protein ( Homo sapiens
cDNA FLJ14451 fis, clone HEMBB1001834. ).
Length = 434
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +2
Query: 209 PKPPELSPIYLPVSPVMPV-----QPLTSLTLTQTASGPETSP-ASDNLSV 343
P P ++P+ + V+PV PV QPL +T++ T + T P AS ++ +
Sbjct: 379 PPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTYPIASQSMRI 429
>U31659-1|AAA84390.1| 677|Homo sapiens TAFII80 protein.
Length = 677
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 95 VHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMP-VQP 271
V + P + P + F + A +T QV P S PV+ +P VQP
Sbjct: 521 VSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQP 580
Query: 272 LTSLTLTQTASGPETSPA 325
+ L T T + P T+P+
Sbjct: 581 IVKLVSTATTAPPSTAPS 598
>L25444-1|AAA63643.1| 677|Homo sapiens TAFII70 protein.
Length = 677
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 95 VHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMP-VQP 271
V + P + P + F + A +T QV P S PV+ +P VQP
Sbjct: 521 VSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQP 580
Query: 272 LTSLTLTQTASGPETSPA 325
+ L T T + P T+P+
Sbjct: 581 IVKLVSTATTAPPSTAPS 598
>BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for
IMAGE:4824581) protein.
Length = 603
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/83 (21%), Positives = 37/83 (44%)
Frame = +2
Query: 104 TTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSL 283
T+ PT +SP + K S P+ ++M + P + + P ++P +P TS
Sbjct: 2 TSPFAPTMSSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSR 61
Query: 284 TLTQTASGPETSPASDNLSVPSS 352
+ S +++ ++ PS+
Sbjct: 62 NSVMSPSSSKSTKSTSTKRAPSN 84
>BC018115-1|AAH18115.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 95 VHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMP-VQP 271
V + P + P + F + A +T QV P S PV+ +P VQP
Sbjct: 521 VSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQP 580
Query: 272 LTSLTLTQTASGPETSPA 325
+ L T T + P T+P+
Sbjct: 581 IVKLVSTATTAPPSTAPS 598
>AY149894-1|AAN10295.1| 677|Homo sapiens TAF6 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 80kDa
protein.
Length = 677
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 95 VHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMP-VQP 271
V + P + P + F + A +T QV P S PV+ +P VQP
Sbjct: 521 VSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQP 580
Query: 272 LTSLTLTQTASGPETSPA 325
+ L T T + P T+P+
Sbjct: 581 IVKLVSTATTAPPSTAPS 598
>L12141-1|AAA58477.1| 347|Homo sapiens fork head-related protein
protein.
Length = 347
Score = 30.3 bits (65), Expect = 2.6
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 206 WPKPPELSPIYLPVSPVMPVQPLTS-LTLTQTASG-PETSPASDNLSVP 346
W PE +Y PV+PV + PL S +TL +S P PAS S P
Sbjct: 15 WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSPYPGGLPASPLPSGP 63
>Z34276-1|CAA84030.1| 94|Homo sapiens mucin protein.
Length = 94
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +2
Query: 248 SPVMPVQPLTSLTLTQTASGPETSPA----SDNLSVPSSDT 358
SPV P TS + T T SGP T+P+ + +SVP++ T
Sbjct: 5 SPV-PTASTTSASTTSTTSGPGTTPSPVPTTSTISVPTTST 44
>BT006720-1|AAP35366.1| 350|Homo sapiens forkhead box A3 protein.
Length = 350
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 206 WPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 310
W PE +Y PV+PV + PL S S P
Sbjct: 15 WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSP 49
>BC016024-1|AAH16024.1| 350|Homo sapiens forkhead box A3 protein.
Length = 350
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 206 WPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 310
W PE +Y PV+PV + PL S S P
Sbjct: 15 WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSP 49
>AY157990-1|AAN76325.1| 1778|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia 5 protein.
Length = 1778
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 230 PIYLPVSPVMPVQPLTSLTLTQTASGPETSP 322
PIY PV+PV P P ++ + S PE+SP
Sbjct: 849 PIYSPVTPVTPGTPGNTMHF-ENISSPESSP 878
>AY147037-1|AAN17675.1| 1858|Homo sapiens MLL5 protein.
Length = 1858
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 230 PIYLPVSPVMPVQPLTSLTLTQTASGPETSP 322
PIY PV+PV P P ++ + S PE+SP
Sbjct: 929 PIYSPVTPVTPGTPGNTMHF-ENISSPESSP 958
>AK223473-1|BAD97193.1| 350|Homo sapiens forkhead box A3 variant
protein.
Length = 350
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 206 WPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 310
W PE +Y PV+PV + PL S S P
Sbjct: 15 WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSP 49
>AK128234-1|BAC87344.1| 167|Homo sapiens protein ( Homo sapiens
cDNA FLJ46368 fis, clone TESTI4051504. ).
Length = 167
Score = 29.5 bits (63), Expect = 4.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 197 HQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASD 331
H R P P + + S V PV +T T T PE PA D
Sbjct: 21 HPRLPAPRGQGSLSILCSAVSPVPSVTPSTWMATTEKPELGPAHD 65
>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
FLJ46149 fis, clone TESTI4000621, moderately similar to
Homo sapiens Snf2-related CBP activator protein (SRCAP).
).
Length = 2427
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPS 349
PA + M + + P S + +P+S +P+ T TL AS P T P S L+V +
Sbjct: 1410 PASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPT--TLPAPASAPLTIPISAPLTVSA 1467
Query: 350 S 352
S
Sbjct: 1468 S 1468
>AK126463-1|BAC86558.1| 559|Homo sapiens protein ( Homo sapiens
cDNA FLJ44499 fis, clone UTERU3000665, highly similar
to Homo sapiens Snf2-related CBP activator protein
(SRCAP). ).
Length = 559
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPS 349
PA + M + + P S + +P+S +P+ T TL AS P T P S L+V +
Sbjct: 59 PASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPT--TLPAPASAPLTIPISAPLTVSA 116
Query: 350 S 352
S
Sbjct: 117 S 117
>AF519459-1|AAM74947.1| 1858|Homo sapiens MLL5 protein.
Length = 1858
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 230 PIYLPVSPVMPVQPLTSLTLTQTASGPETSP 322
PIY PV+PV P P ++ + S PE+SP
Sbjct: 929 PIYSPVTPVTPGTPGNTMHF-ENISSPESSP 958
>AF176114-1|AAD51980.1| 350|Homo sapiens hepatocyte nuclear
factor-3 gamma protein.
Length = 350
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 206 WPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 310
W PE +Y PV+PV + PL S S P
Sbjct: 15 WSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSP 49
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPS 349
PA + M + + P S + +P+S +P+ T TL AS P T P S L+V +
Sbjct: 1151 PASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPT--TLPAPASAPLTIPISAPLTVSA 1208
Query: 350 S 352
S
Sbjct: 1209 S 1209
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 29.5 bits (63), Expect = 4.5
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 170 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPS 349
PA + M + + P S + +P+S +P+ T TL AS P T P S L+V +
Sbjct: 1233 PASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPT--TLPAPASAPLTIPISAPLTVSA 1290
Query: 350 S 352
S
Sbjct: 1291 S 1291
>AL117481-1|CAB55954.1| 319|Homo sapiens hypothetical protein
protein.
Length = 319
Score = 29.1 bits (62), Expect = 6.0
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +2
Query: 113 MTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLT 292
MTP +ASP + + S T P+RA++ + W P +P + +M ++ S+T T
Sbjct: 13 MTPPRASPRTPPRASPTTTPSRASL-TRTPSWAS-PTTTP---SRASLMKMESTVSITRT 67
Query: 293 QTASGPETSPA 325
+ P +P+
Sbjct: 68 PPRASPTGTPS 78
>X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II
transactivator protein.
Length = 1130
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 161 RTWPARATMQVKHQRWPKPPELSPIYLPVSPV-----MPVQPLTSLTLTQTASGPETSPA 325
R +P +KH + +PP + L V PV +P PL +L + ASG
Sbjct: 145 RPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEK 204
Query: 326 SDNLSVPSSDT 358
+D + +P S +
Sbjct: 205 TDQIPMPFSSS 215
>U31931-1|AAA92364.1| 353|Homo sapiens class II MHC mutant RJ2.2.5
protein.
Length = 353
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 161 RTWPARATMQVKHQRWPKPPELSPIYLPVSPV-----MPVQPLTSLTLTQTASGPETSPA 325
R +P +KH + +PP + L V PV +P PL +L + ASG
Sbjct: 145 RPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEK 204
Query: 326 SDNLSVPSSDT 358
+D + +P S +
Sbjct: 205 TDQIPMPFSSS 215
>U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivator
CIITA protein.
Length = 1130
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 161 RTWPARATMQVKHQRWPKPPELSPIYLPVSPV-----MPVQPLTSLTLTQTASGPETSPA 325
R +P +KH + +PP + L V PV +P PL +L + ASG
Sbjct: 145 RPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEK 204
Query: 326 SDNLSVPSSDT 358
+D + +P S +
Sbjct: 205 TDQIPMPFSSS 215
>EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major
histocompatibility complex, transactivator protein.
Length = 1130
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 161 RTWPARATMQVKHQRWPKPPELSPIYLPVSPV-----MPVQPLTSLTLTQTASGPETSPA 325
R +P +KH + +PP + L V PV +P PL +L + ASG
Sbjct: 145 RPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEK 204
Query: 326 SDNLSVPSSDT 358
+D + +P S +
Sbjct: 205 TDQIPMPFSSS 215
>DQ217660-1|ABB29845.1| 1759|Homo sapiens castor long variant protein.
Length = 1759
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 221 ELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 358
E P P SP PV P+T+ T++ + GP SPA SVPS+ T
Sbjct: 1077 ETKPPMAPSSP--PVPPVTTATVS-SLEGPAPSPA----SVPSTPT 1115
>BC051883-1|AAH51883.2| 1166|Homo sapiens castor zinc finger 1
protein.
Length = 1166
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 221 ELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 358
E P P SP PV P+T+ T++ + GP SPA SVPS+ T
Sbjct: 1077 ETKPPMAPSSP--PVPPVTTATVS-SLEGPAPSPA----SVPSTPT 1115
>BC045631-1|AAH45631.1| 999|Homo sapiens TNRC6C protein protein.
Length = 999
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 218 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTW 361
P+++P +P P + + + SG + P+S N ++PSS W
Sbjct: 677 PDVTPGSVPTGPTINTT-IQDVNRYLLKSGGSSPPSSQNATLPSSSAW 723
>BC025330-1|AAH25330.1| 1025|Homo sapiens C14orf43 protein protein.
Length = 1025
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 218 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 343
P + P+ +PV V P + + L + GPE +PA SV
Sbjct: 524 PLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSV 565
>BC015668-1|AAH15668.1| 1024|Homo sapiens C14orf43 protein protein.
Length = 1024
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 218 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 343
P + P+ +PV V P + + L + GPE +PA SV
Sbjct: 524 PLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSV 565
>BC006511-1|AAH06511.1| 1036|Homo sapiens C14orf43 protein protein.
Length = 1036
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 218 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 343
P + P+ +PV V P + + L + GPE +PA SV
Sbjct: 535 PLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSV 576
>BC004410-1|AAH04410.2| 614|Homo sapiens CASZ1 protein protein.
Length = 614
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 221 ELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 358
E P P SP PV P+T+ T++ + GP SPA SVPS+ T
Sbjct: 525 ETKPPMAPSSP--PVPPVTTATVS-SLEGPAPSPA----SVPSTPT 563
>AY084055-1|AAM15724.1| 326|Homo sapiens MHC class II
transactivator CIITAlo protein.
Length = 326
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 161 RTWPARATMQVKHQRWPKPPELSPIYLPVSPV-----MPVQPLTSLTLTQTASGPETSPA 325
R +P +KH + +PP + L V PV +P PL +L + ASG
Sbjct: 145 RPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEK 204
Query: 326 SDNLSVPSSDT 358
+D + +P S +
Sbjct: 205 TDQIPMPFSSS 215
>AL139423-3|CAI22571.1| 1166|Homo sapiens castor zinc finger 1
protein.
Length = 1166
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 221 ELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 358
E P P SP PV P+T+ T++ + GP SPA SVPS+ T
Sbjct: 1077 ETKPPMAPSSP--PVPPVTTATVS-SLEGPAPSPA----SVPSTPT 1115
>AL139423-2|CAI22570.1| 706|Homo sapiens castor zinc finger 1
protein.
Length = 706
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 221 ELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 358
E P P SP PV P+T+ T++ + GP SPA SVPS+ T
Sbjct: 24 ETKPPMAPSSP--PVPPVTTATVS-SLEGPAPSPA----SVPSTPT 62
>AK127785-1|BAC87133.1| 1019|Homo sapiens protein ( Homo sapiens
cDNA FLJ45886 fis, clone OCBBF3021361, moderately
similar to Rapa-1. ).
Length = 1019
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 218 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSV 343
P + P+ +PV V P + + L + GPE +PA SV
Sbjct: 524 PLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSV 565
>AK056421-1|BAB71179.1| 582|Homo sapiens .-). protein.
Length = 582
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 218 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTW 361
P+++P +P P + + + SG + P+S N ++PSS W
Sbjct: 260 PDVTPGSVPTGPTINTT-IQDVNRYLLKSGGSSPPSSQNATLPSSSAW 306
>AK000328-1|BAA91089.1| 1044|Homo sapiens protein ( Homo sapiens cDNA
FLJ20321 fis, clone HEP09380. ).
Length = 1044
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 221 ELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 358
E P P SP PV P+T+ T++ + GP SPA SVPS+ T
Sbjct: 955 ETKPPMAPSSP--PVPPVTTATVS-SLEGPAPSPA----SVPSTPT 993
>AF410154-1|AAL04118.1| 932|Homo sapiens MHC2TA protein.
Length = 932
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 161 RTWPARATMQVKHQRWPKPPELSPIYLPVSPV-----MPVQPLTSLTLTQTASGPETSPA 325
R +P +KH + +PP + L V PV +P PL +L + ASG
Sbjct: 145 RPFPEELPADLKHWKPAEPPTVVTGSLLVGPVSDCSTLPCLPLPALFNQEPASGQMRLEK 204
Query: 326 SDNLSVPSSDT 358
+D + +P S +
Sbjct: 205 TDQIPMPFSSS 215
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,658,459
Number of Sequences: 237096
Number of extensions: 1332400
Number of successful extensions: 3702
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3695
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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