Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31482
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 42 1e-04
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159... 40 8e-04
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485... 37 0.004
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109... 32 0.12
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 32 0.16
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 30 0.65
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 29 1.1
02_04_0209 - 20942021-20942181,20942354-20942420,20942651-209427... 29 1.5
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 28 2.0
11_03_0210 - 11693750-11693797,11694017-11694094,11694285-116943... 28 2.6
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475... 28 2.6
02_03_0267 - 17081551-17082636,17084935-17085252 28 2.6
11_06_0669 - 26084906-26087350 27 6.1
11_06_0365 - 22742886-22744223 27 6.1
11_06_0362 - 22723104-22724441 27 6.1
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 26 8.1
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2
Query: 221 RFSSFVQMRGSIPSYWSQDISKMVPKPAISI 313
R S+ VQMRGSIP +WSQ+ ++ PKP I +
Sbjct: 281 RMSAVVQMRGSIPLFWSQEAGRLSPKPDIIV 311
>06_02_0324 +
14414422-14414541,14415271-14415347,14415807-14415994,
14416276-14416373,14416633-14416766,14416852-14416953,
14417931-14418038,14418335-14418465,14420068-14420142,
14420439-14420518,14421229-14421320,14422333-14422634,
14422717-14422856
Length = 548
Score = 39.5 bits (88), Expect = 8e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 221 RFSSFVQMRGSIPSYWSQDISKMVPKPAISI 313
R S+ VQMRGSIP +W Q+ ++ PKP I +
Sbjct: 99 RMSAVVQMRGSIPLFWWQEAGRLSPKPDIIV 129
>06_01_0665 -
4855870-4855956,4856407-4856482,4856794-4856910,
4857062-4857127,4858578-4858670,4858788-4858909,
4859810-4860365,4860485-4860628,4860698-4860831,
4861003-4861100,4861172-4861353,4861464-4861540,
4862083-4862305,4862580-4862745,4862836-4863040,
4864981-4865199
Length = 854
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 221 RFSSFVQMRGSIPSYWSQDISKMVPKPAI 307
+ SS VQ RGSIP +WSQ+ SK+ KP I
Sbjct: 328 QISSVVQNRGSIPLFWSQETSKLNLKPDI 356
>02_05_0973 +
33209385-33209456,33210517-33210721,33210810-33210975,
33211268-33211490,33211928-33212004,33212090-33212183,
33212202-33212271,33212350-33212447,33212565-33212692,
33212772-33212900,33213013-33213421,33213984-33214105,
33214224-33214313,33215092-33215304,33215453-33215584,
33216258-33216333,33216403-33216420
Length = 773
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 245 RGSIPSYWSQDISKMVPKPAI 307
RGSIP +WSQ+ SKM KP I
Sbjct: 281 RGSIPLFWSQETSKMNIKPDI 301
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 212 LTYRFSSFVQMRGSIPSYWSQDISKMVPKPAI 307
+ ++ SS VQ RGSIP W Q+ S++ +P I
Sbjct: 271 IPHQISSVVQHRGSIPLIWFQETSRLNIRPDI 302
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 29.9 bits (64), Expect = 0.65
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -3
Query: 281 RCLVTSNLVLXLSFVQMS*ICKLTFLSLLFILFVQSFIHPQYIFRIRHI 135
+C+V N+++ +SF Q +C L FL +++ + + P Y ++ +
Sbjct: 138 KCIV-QNIIVDISFNQFGGLCTLCFLEKIYLGLIYHKLGPLYFLVVQQL 185
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 281 RCLVTSNLVLXLSFVQMS*ICKLTFLSLLFILFVQSFIHPQYIFRIR 141
+CLV N+V+ +SF Q+ +C L FL + L Q+ + + I I+
Sbjct: 133 KCLV-DNIVVDISFNQVGGLCTLCFLEEVDALISQNHLFKRSIILIK 178
>02_04_0209 -
20942021-20942181,20942354-20942420,20942651-20942743,
20943026-20943119,20943690-20943762,20943865-20943973,
20944564-20944663,20945389-20945487,20945571-20945641,
20946067-20946144,20946317-20946403,20946538-20946636
Length = 376
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 227 SSFVQMRGSIPSYWSQDISKMVPKPAISI 313
+S+VQ+RGSIP W Q I + KP+ I
Sbjct: 29 ASYVQVRGSIPFLWVQ-IVDLTYKPSFDI 56
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 197 KDLKMLTYRFSSFVQMRGSIPSYWSQDISKMV 292
KD + + FSS++ RG+IP +W +I V
Sbjct: 276 KDGQGQSIPFSSYIWRRGTIPIWWGAEIKNAV 307
>11_03_0210 -
11693750-11693797,11694017-11694094,11694285-11694371,
11694751-11694884,11695021-11695093,11695352-11695408,
11697295-11697378,11698748-11698843,11699133-11699498
Length = 340
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 227 SSFVQMRGSIPSYWSQDISKMVPKPAISI 313
+S+VQ+RGS+P W Q I + KP+ +
Sbjct: 266 ASYVQVRGSMPFLWEQ-IVDLTYKPSFDV 293
>07_01_0635 +
4753919-4754090,4754200-4754258,4754377-4754432,
4754698-4754842,4755506-4755580,4755844-4755933,
4756218-4756295,4757879-4758376,4758512-4758997
Length = 552
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 338 FCKRISGGQSILLAWVPSSRCLVTS 264
FC R++G Q+IL + P S C VTS
Sbjct: 97 FCYRVTGRQTIL-CYFPFSECRVTS 120
>02_03_0267 - 17081551-17082636,17084935-17085252
Length = 467
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 194 IKDLKMLTYRFSSFVQMRGSIPSYWSQDIS 283
IKDL++LT R SSF + G P SQ IS
Sbjct: 196 IKDLRLLTKRNSSFRAVIGENPDSISQMIS 225
>11_06_0669 - 26084906-26087350
Length = 814
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 218 KLTFLSLLFILFVQSFIHPQYIFRIRHIKHTVCFGLT 108
KL LS+ I F P+ I ++RH++H +CF T
Sbjct: 480 KLRVLSVKIITGSHVFSFPESIGQLRHLRH-LCFRTT 515
>11_06_0365 - 22742886-22744223
Length = 445
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 258 QVTGHKTSRRWYPSQQYRLTSGDPFAEI 341
Q+TG K +RWYPS Y L + P+ +I
Sbjct: 265 QITG-KVPQRWYPSAMYLLRA--PWGDI 289
>11_06_0362 - 22723104-22724441
Length = 445
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 258 QVTGHKTSRRWYPSQQYRLTSGDPFAEI 341
Q+TG K +RWYPS Y L + P+ +I
Sbjct: 265 QITG-KVPQRWYPSAMYLLRA--PWGDI 289
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 267 GHKTSRRWYPSQQYRLTSGDPFAEIPGKTFEQF 365
G + + +P Y + SG EIP TFE+F
Sbjct: 273 GRVSQQALFPENTYGVDSGGDPNEIPKLTFEEF 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,036,927
Number of Sequences: 37544
Number of extensions: 123932
Number of successful extensions: 285
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -