Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31481
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    44   1e-05
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   9.0  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
 Frame = -2

Query: 297 IFIHIIPQGTPYILIPFXXXXXXXXXXIRPGTLAVRLTANIIAGHLLITLL-----RRTG 133
           +F   +P GTP  LIP            R  +L +RL ANIIAGHL +++L        G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMG 208

Query: 132 TN-ISFYXXXXXXXXXXXXXXLESAVAIIQSYVITIL 25
            N I+F               LE  +A IQ+YV  IL
Sbjct: 209 LNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 235 NNYYKWY*NIGCSLWNYMNKYVI 303
           N++Y W+       WNY N +++
Sbjct: 360 NSFYDWHNGATQVKWNYKNPHIL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 983,619
Number of Sequences: 5004
Number of extensions: 13390
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)