Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31479
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   0.88 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.6  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   8.2  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 302 SPFSCNKCDSCCRSSEPSIEPLSSRRKSAVEAN 400
           SPF  + CDS    S   IEP+SSR+ S V  N
Sbjct: 257 SPF--DSCDSFHSGSSIPIEPVSSRQSSVVNNN 287


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 224  CRRIGSLLCFNSEER-FSQSICSGHCQKESRGAMGTPG 114
            C   GS++CFN+ +   S    +G C K +    G+ G
Sbjct: 1932 CMLCGSVICFNARQNTVSSRRLTGECNKHAATCTGSVG 1969


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +1

Query: 109 PLPGVPIAPLLSFWQWPEQIDCENLSSLLKHRSEPIRRHRYRRMITGINVVLGVKGW 279
           PL   P+ P L   Q  E+      S   +H  +P     YR   T IN V  V GW
Sbjct: 711 PLKAEPLVPDLPVKQLKEKA-----SHFKRHSGDPNFLKLYRESFTLINTVSLVSGW 762


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 115 PGVPIAPLLSFWQWPEQIDCENLSSL 192
           P + +AP+++  QW E+ID     +L
Sbjct: 405 PTLVVAPVVAIMQWKEEIDTHTNKAL 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,357
Number of Sequences: 5004
Number of extensions: 68615
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)