Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31479
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428...    31   0.70 
03_05_0312 - 23019662-23020093                                         30   2.1  
02_01_0344 + 2467191-2468282                                           29   2.8  
01_06_1741 + 39581656-39581680,39582627-39582697,39582779-395828...    29   4.9  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    28   6.5  
04_04_1423 - 33455818-33457076,33457165-33457201                       28   6.5  
04_04_1173 + 31469357-31469920                                         28   6.5  

>07_03_0752 -
           21241883-21242233,21242336-21242486,21242586-21242823,
           21242917-21243127,21243214-21243344,21245046-21245931,
           21246087-21246140,21246397-21246461,21246842-21246892,
           21246960-21247029,21247493-21247597
          Length = 770

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 166 IDCENLSSLLKHRSEPIRRHRYRRMITGINVVLGVKGWGSPHPKDVSIL 312
           ++C + S LL     P +   Y     G +V   ++G+GSPHP    +L
Sbjct: 32  LNCTHCSVLLHKSRLPCKYRGYSAKPCGFSVTALLRGYGSPHPNGCIML 80


>03_05_0312 - 23019662-23020093
          Length = 143

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 237 PPISVPPYRLTPVLQQ*GEVLAIDL 163
           PP+S PPY L+P ++  G + A DL
Sbjct: 46  PPLSPPPYPLSPSMEDDGMIYAEDL 70


>02_01_0344 + 2467191-2468282
          Length = 363

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 136 GERWVLLVEDVATRWVELYALVDATAVACSRVLLEEYFLRYGL 8
           G R+VL+  D  T+W E   L + T    +  +L+    R+G+
Sbjct: 87  GHRFVLVATDYFTKWAEAVPLKNMTHTELNDFILKHIIHRFGI 129


>01_06_1741 +
           39581656-39581680,39582627-39582697,39582779-39582898,
           39583034-39583094,39583186-39583242,39583413-39583600,
           39583747-39583818,39583953-39584180
          Length = 273

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 637 GSARTRRVLLTTLEVRVSPERSVTLEFYCFSRC 539
           G    +R+LL TL V   P+ S+ LE++  + C
Sbjct: 48  GEVDGKRILLGTLSVEHRPQLSIDLEYFSLTFC 80


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 300 IFRVGGAPTLYAEHHIDTGDHPPISVPPYRLTPVLQQ*GEVLAIDLFGPLPE 145
           I R G  PTL     ++  +  PI  P Y+L  V++   +   I +FG + E
Sbjct: 314 ICRKGVKPTLQGFECVNCDNTEPIITPSYKLNVVIEDNTDRAKIFMFGGMAE 365


>04_04_1423 - 33455818-33457076,33457165-33457201
          Length = 431

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 269 TPSTTLIPVIIRLYRCRRIGSLLCFNSEERFSQSICSGHCQKESRGAMG 123
           T     +  I+ +Y+C +I   + ++S       I +G     SRG +G
Sbjct: 17  TTGIVAVVTIVAIYKCAKIAIKMWYSSSRDHHTPIANGGGSSSSRGGIG 65


>04_04_1173 + 31469357-31469920
          Length = 187

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 249 YQCGARRKGLGLPPP*RCLHSPAINVIAAAVHRSQA*NPYH 371
           + C +RR  LGLPP  R   SP++ +   +V RS+   P H
Sbjct: 41  WACASRR--LGLPPTTRSFASPSLVLFDTSVSRSRHRCPPH 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,987,039
Number of Sequences: 37544
Number of extensions: 552045
Number of successful extensions: 1459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)