Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31479
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-2|CAA93862.1|  440|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear recep...    28   7.7  
AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormo...    28   7.7  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z70035-2|CAA93862.1|  440|Caenorhabditis elegans Hypothetical
           protein R09D1.2 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 145 FWQWPEQIDCENLSSLLKHRSEPIRRHRYRRMITGINVVLGVKGW 279
           FW+W    D    SS L+     +R HR   +I+ +    GV  W
Sbjct: 196 FWKWSSSGDKFTYSSFLQELKHKLRSHRQNYIISIVLPPAGVDTW 240


>AY204173-1|AAO39177.1|  369|Caenorhabditis elegans nuclear receptor
           NHR-64 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 416 HSYSIG*VTRFPEKCQVDEAKSST 487
           HSY    V RF EKCQVD+AK ++
Sbjct: 59  HSY----VCRFGEKCQVDKAKRNS 78


>AF043694-1|AAC24283.1|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 64, isoform a protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 416 HSYSIG*VTRFPEKCQVDEAKSST 487
           HSY    V RF EKCQVD+AK ++
Sbjct: 102 HSY----VCRFGEKCQVDKAKRNS 121


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 278 GAPPTLKMSPFSCNKCDSCCRSSEPSIEPLSSRRKS 385
           G PP L  +P  CN  DSC  S +    P  SR  S
Sbjct: 66  GPPPGL--APVQCNDFDSCYSSCDDISHPSLSRESS 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,587
Number of Sequences: 27780
Number of extensions: 417349
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)