Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31473
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   0.75 
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.3  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 231 YAGKILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTS 347
           Y GK   +D++  SY+ DE K+ +    K  + +   T+
Sbjct: 534 YLGKPTKEDSEWPSYSRDEPKYFIFDAEKTGLGKGPRTT 572


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 198 KDFVADHQRLIYAGKILLDDNKINSY 275
           KDF    Q+     KIL+  NK N++
Sbjct: 12  KDFGTYFQQYCLHHKILIKKNKCNAF 37


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 150  EETXKALKLKIEVEKG 197
            E+   A+KLK  +EKG
Sbjct: 1731 EKNEAAMKLKKRIEKG 1746


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,682
Number of Sequences: 438
Number of extensions: 1764
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)