Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31472
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    85   7e-18
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       28   0.91 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   6.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.4  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   8.5  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   8.5  

>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 85.0 bits (201), Expect = 7e-18
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
 Frame = +3

Query: 42  GQKVRSKE-ESIKNNLKQYGTESKYIDILVSDFSLPLWRDGVKFDAMITDPPYGVREPTE 218
           G+++R K   SIK+N +QY     ++D    D +    R  +  DA++ DPPYGVR   +
Sbjct: 269 GRQMRGKNGRSIKSNFRQYKLSPFFLDTFTGDVTNCPLRKNLLLDAIVCDPPYGVRAGAK 328

Query: 219 KIGIERNNYTLSEEHLTNHIPSKVEYGLPHIYSDLLNFAARHLEMNGRLVCWFPVIRADY 398
           KI               NH P   +Y +  +  D++ FA+  L   GRLV W P I  +Y
Sbjct: 329 KIAKCSQRPPKESSSTGNHYPKLEQYQISDMVYDIICFASDRLVDGGRLVLWLPTITEEY 388

Query: 399 QDEQLPSHPCLS 434
             + +PSHP LS
Sbjct: 389 GIDDIPSHPYLS 400


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 420 VKAAAHLDSRP**QETNRPVSRSSPDVLRQNSTGHCRYEEGRI 292
           V+A A + +    +  N PVS SSP+V   N T  C +E   +
Sbjct: 388 VEAPAEVGAISLTESFNSPVSNSSPNVPINNFTSTCAFENSHL 430


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 222 IGIERNNYTLSEEHLTNHIPSKVEYGLPHIYSD 320
           I +  NNY LSEE L     S+V   + H + D
Sbjct: 284 IQVMNNNYQLSEEALQYITRSRVNLWIAHYWKD 316


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 321 LLNFAARHLE-MNGRLVCWFPVIRADYQDEQLPSH 422
           LL FA  + E ++  +  WFP  R++Y D   P +
Sbjct: 805 LLGFANTNQEKLSSTVRSWFPSHRSEYHDLSFPDY 839


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 585 SSPIAKYLSLKLGTPLLGSTVTLDTSSHIFS 493
           S+PI +Y  L   TP+  STV L++S+ I S
Sbjct: 585 STPITRYSVLNSSTPITSSTV-LNSSTPITS 614


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 339 RHLEMNGRLVCWFPVIRADYQDEQLPSHPCLS*SQTRNRS 458
           RH  + GR++C F V+         P   C+S +Q   R+
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQHPQPLLICMSCNQNYFRN 334


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 264 LTNHIPSKVEYGLPHIYSDL 323
           L   IPS  E+G+P +Y D+
Sbjct: 83  LDEAIPSLKEFGIPELYKDI 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,625
Number of Sequences: 5004
Number of extensions: 52623
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)