Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31472
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 93 2e-19
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 30 1.2
01_05_0091 + 18048595-18050559 29 2.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 28 6.6
06_01_0603 - 4350124-4350590,4350995-4353608 28 6.6
11_02_0068 + 7991816-7992603,7995209-7997177 27 8.7
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 8.7
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 27 8.7
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 27 8.7
02_05_0552 - 29911280-29912541,29912633-29912762 27 8.7
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 92.7 bits (220), Expect = 2e-19
Identities = 60/151 (39%), Positives = 79/151 (52%), Gaps = 10/151 (6%)
Frame = +3
Query: 6 MMLHGRTRPTRVGQKVRSKEESIKNNLKQYGTESKYIDILVSDFSLPLWRDGVK--FDAM 179
M G RV + R + +I +N +QY + IL +D ++P WR G+K FDA+
Sbjct: 265 MAFQGADIDIRVVRDGRGPDCNIWSNFEQYKLPEP-LCILRADNNVPPWRPGLKEVFDAI 323
Query: 180 ITDPPYGVREPTEKIGIER------NNYTLSEEHLTNHIPSKVEYGLPHIYSDLLNFAAR 341
I DPPYGVR K G + YT+ +E +HIPS Y L DLL+ AAR
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRDSHIPSTAPYSLAECVHDLLHLAAR 383
Query: 342 HLEMNGRLVCWFPVIRAD--YQDEQLPSHPC 428
L M GRLV +FPV+R D + P HPC
Sbjct: 384 MLVMGGRLVFFFPVVREDGVANPAKYPEHPC 414
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 180 ITDPPYGVREPTEKIGIERNNYTLSEEHLTNHIPSKVEYGLPH 308
ITDPP + E + E + E T++ P K+ GLPH
Sbjct: 203 ITDPPEEINEVAIDVEREEDEGGTVGETFTDYRPPKLSLGLPH 245
>01_05_0091 + 18048595-18050559
Length = 654
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 233 LYTNLLCWFANAVRWIGNHCVEFNSIPPERQRKITDQYINV--FRLRAILLQVILNTLFF 60
L +LLC +A W+ V F P E + I++ +RA+ +Q +L + F
Sbjct: 190 LGNHLLCPVLSAAAWVSGEYVNFTKDPVELVEALLQPRISLLPMSVRAVYIQAVLKVITF 249
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -2
Query: 356 VHLQMSCGKIQQVTVD----MRKAVFHFRRYVICEVLLR*SVIVTLYTNLLCWFANAVRW 189
V+ M+C QQ D + K + ++V+ ++L + L N A V W
Sbjct: 568 VNASMNCSSSQQPNYDEALELLKMAVNSCKFVMLPLILLYDELAVLLENSSLHSA-IVEW 626
Query: 188 IGNHCVEFNSI 156
+G H EF+++
Sbjct: 627 VGEHVAEFDTV 637
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 518 WIRHHISSHTSAGVVLSTWLRSVPSLRSTEA 426
W+R H +A V + W R PS ST A
Sbjct: 915 WVRRHYPHDVAAVVAHAPWRREAPSPMSTAA 945
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 51 VRSKEESIKNNLKQYGTESKYIDILVSDFSLPLWR 155
V E++I N L++Y ++ +YI I+ + + +W+
Sbjct: 244 VEDDEQAIINKLREYLSDKRYIVIVDDIWDMQIWK 278
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 130 LTSISMYLDSVPYCFKLFLILSSFDRTF*PTRVGLVL 20
L S++ DS+P FKL ++ DR F VG VL
Sbjct: 339 LCSVARCTDSLPVLFKLKFKFANHDRVFSGDGVGTVL 375
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 383 NRKPTDQSPVHLQMSCGKIQQ-VTVDMRKAVFHFRRYVICEV 261
N P D+ VH CG+I + ++ + A+ RY++ +V
Sbjct: 865 NNNPADRLSVHEVGRCGRIHSPMVMEAKNALLAIERYIVGKV 906
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 87 KQYGTESKYIDILVSDFSLPLWRDGVKFDAMI 182
+ Y +D+L D+SL LW G F AMI
Sbjct: 283 RSYKGPELLVDLLDYDYSLDLWSLGCMFAAMI 314
>02_05_0552 - 29911280-29912541,29912633-29912762
Length = 463
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 564 LSLKLGTPLLGSTVTLDTSSHI 499
+S+ LGTP + TVT+DT S +
Sbjct: 129 ISVGLGTPAVTQTVTIDTGSDV 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,879
Number of Sequences: 37544
Number of extensions: 333569
Number of successful extensions: 901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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