Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31470
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.49 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 408 CFWVIYITY 434
           C+WVIY+TY
Sbjct: 486 CYWVIYVTY 494


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 621 EVHL*VPTSSSRASIDQSVLRSW*EHKKRASVPSSRYATVDST-SSNCD 478
           EV +    SS + +ID     +    K+R  +  ++YA  ++T SS CD
Sbjct: 86  EVSIITEDSSRKQTIDPLSSNTQITRKRRVGIVENQYAVENNTGSSLCD 134


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 497 LSTVAYLLEGTDARFLCSYQERSTDWSIEALLEE 598
           L  V+Y++   D   LC  QE      I++LLE+
Sbjct: 11  LCIVSYMMVRCDDITLCLKQENLNLDDIDSLLED 44


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 257  AVLFRNLTPTL---SDREYVAFASTSTKLAEAQMATCKTNNRLTIAPG 123
            ++   N  PT+   SDR+  A  +TS K     +     +++  ++PG
Sbjct: 868  SISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPG 915


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,288
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)