Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31465
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    28   0.51 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   2.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   3.6  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   4.8  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    24   6.3  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    24   8.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   8.3  

>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 54  SGGTLTNNKEEAHQIVTGKLYAVGSATTPSERRLSVPA-TTIQS 182
           +GGT+TN   E  Q +T  L A  S T P    + +P  +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366



 Score = 23.8 bits (49), Expect = 8.3
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -3

Query: 359 AFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGSVSTILCGR 186
           AF+   P SGS      E   P+   +    +      TS L    G  PG+V  IL G 
Sbjct: 303 AFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGTVEVILPGP 361

Query: 185 AALYGG 168
           + +Y G
Sbjct: 362 STIYSG 367


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 362 SAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 234
           S  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 130 SVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 247 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGVVALPTAYSLPV 101
           LH + ED+ + G FL S A  R+C   +   + +    + L + +  P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 224 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 126
           + PGS   +L G A L G  G   +S+  G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 208 FLPSYAGGRLCMVVAGTLKRLSLGVVALPTAYSLPVTI 95
           ++PS AGG  C+ ++   K   L  + + + + +P  I
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFII 425


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 232 EDSWAPGQFLPSYAGG 185
           +D  APG F PS+ GG
Sbjct: 125 DDGAAPGGFAPSFRGG 140


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 280 KTAELGVVPSVKKSKSDPEKG 342
           K  +L  VP  K  ++DPEKG
Sbjct: 7   KAGKLRRVPGTKLLRADPEKG 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  LSSPHLTRTVHSHLKWRNAH 70
           L S  L + + S LKWRN H
Sbjct: 373 LLSAGLQKAIDSLLKWRNRH 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,602
Number of Sequences: 5004
Number of extensions: 31698
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)