Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31465
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   1.1  
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76...    28   2.0  
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982...    26   7.9  
06_01_0994 + 7719974-7721323                                           26   7.9  
03_05_0196 + 21849370-21850278,21850424-21851050                       26   7.9  
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499...    26   7.9  
01_06_0922 - 33022709-33023545                                         26   7.9  

>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 66  LTNNKEEAHQIVTGKLYAVGS-ATTPSERRLSVPATTIQSR 185
           LT+NKE +  IVT +  AVGS    P  + L  P + +  R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461


>09_01_0042 +
           764349-764763,764853-764902,765096-765172,766179-766236,
           767481-767607,768665-768769,768842-769424,769470-769775,
           770048-770139,770391-770440
          Length = 620

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 350 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 264
           E+ P SGS F+FLTE T  S     PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382


>07_03_0172 +
           14697741-14697869,14697878-14697998,14698134-14698226,
           14700888-14700946,14701003-14701599,14702813-14703020,
           14703102-14703178,14703263-14703302,14703413-14703473,
           14704120-14704189,14705014-14705235
          Length = 558

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 93  QIVTGKLYAVGSATTPSERRLSVPATTIQSRPPA*DGRN*PGAQE 227
           +I T +LY  G   T      ++PAT  ++ P   DG+N P  +E
Sbjct: 135 RISTNQLYNSGIPVTVPSPLPAIPATLDENIPRIPDGQNVPRERE 179


>06_01_0994 + 7719974-7721323
          Length = 449

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 277 SKTAELGVVPSVKKSKSDPEKGSNSEKA 360
           ++ AELGVVP+  +   D +KG+ SEKA
Sbjct: 306 ARFAELGVVPAAVELLVDADKGT-SEKA 332


>03_05_0196 + 21849370-21850278,21850424-21851050
          Length = 511

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 340 PSPDRISIS*LKVRRQARRFWNLGRLVVDPLLHHNCED-SWAPGQFLPSYAGGRLCMVVA 164
           P   ++ ++  K+ R+   +W  G +       ++  D   A  +F+P  AG R+C  +A
Sbjct: 393 PKGTKVFVNVWKIGREGE-YWGDGEIFRPERFENSTVDFRGADFEFIPFGAGRRMCPGIA 451

Query: 163 GTLKRLSLGVVAL 125
             L  + L + +L
Sbjct: 452 LGLANMELALASL 464


>01_06_1413 +
           37149038-37149295,37149392-37149603,37149687-37149951,
           37150099-37150407
          Length = 347

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 291 LGGFGTWAV*L*IPFYITIVRILGPRVSFYHPMRA 187
           +GG+  W+    IP+ +  V ++ P V+++ PM A
Sbjct: 142 MGGYVAWSCLNYIPYRLAGVALVVPAVNYWWPMPA 176


>01_06_0922 - 33022709-33023545
          Length = 278

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 TPSERRLSVPATTIQSRPP 191
           TP +RR + PA ++Q +PP
Sbjct: 190 TPEQRRAASPAPSLQRKPP 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,864,334
Number of Sequences: 37544
Number of extensions: 275421
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)