Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31465
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   1.9  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   2.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   7.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 102 TGKLYAVGSATTPSERRLSVPATTIQ 179
           +G+L+  GSA  P E+    P T  Q
Sbjct: 26  SGELFKAGSAEQPKEQEPLPPVTPPQ 51


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 TKRPRFQNRRAWRRTFS*EIEIRSGEGLQFGKS 359
           TKRP+   R + +   + E + R   GLQF K+
Sbjct: 92  TKRPKDWERLSAKYDSTGEYKKRYEHGLQFAKN 124


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 TKRPRFQNRRAWRRTFS*EIEIRSGEGLQFGKS 359
           TKRP+   R + +   + E + R   GLQF K+
Sbjct: 92  TKRPKDWERLSAKYDSTGEYKKRYEHGLQFAKN 124


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 19   TSPHPHRS*PPEVAERSQTT-RKKHIRSSPASYTLLVA 129
            T   P R+ P +   R +   R   IR SPA+YT  V+
Sbjct: 912  TPRSPGRAWPGDSDIRQRPIPRSDDIRLSPAAYTANVS 949


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = +3

Query: 54   SGGTLTNNKEEAHQIVTGKLYAVGSATTP 140
            + GT++  K++   +  GKL  +     P
Sbjct: 1081 TAGTVSQQKQKRRMVKYGKLVMIHEENAP 1109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,369
Number of Sequences: 438
Number of extensions: 2242
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)