Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31461
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical pr...    49   4e-06
AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    29   4.6  

>Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical
           protein C38D4.9 protein.
          Length = 214

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = +1

Query: 535 LQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGCGPGNL 693
           L +L+GF KPKIK EQY T + +A   +  I    G  E K ++D GCG G L
Sbjct: 10  LNELEGFEKPKIKLEQYATSSELAVSMMEMIDETIG-FEGKKLIDIGCGCGML 61


>AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical
           protein H11E01.1 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 13  QSCNVIFLFVKSKLLTN*ILFQTSYLKT-HRFLKHYMLSPNSYLETLDGV 159
           Q+C+V  L + S    N  L++ +  K  + FLKH+M   N  LE L+ +
Sbjct: 190 QTCSVSNLLIVSTNSENVTLWEPNTAKDLNLFLKHWMQGSNGRLERLEAI 239


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 700 QYSDFQGHNPHLK*VYLPNLQIVFELCTEQLQQYERVSR 584
           QYS+ +G  P+LK +      + F +  E LQ++E++ +
Sbjct: 237 QYSESRGFIPNLKFLDCSGTDVTFSILDELLQKHEKLKK 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,540
Number of Sequences: 27780
Number of extensions: 373296
Number of successful extensions: 1105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)